PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01000940001

Common Name

LOC100259233, VIT_01s0146g00280

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

NAC

Protein Properties

Length: 252aa MW: 28601.2 Da PI: 9.6551

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01000940001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.1	1.2e-51	14	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeelvv+yLk+k+ + +l++ ++i+evd++k++PwdLp e+e yfFs+r+ ky++g+r+nrat sgyWkatg dk++ GSVIVT01000940001 14 LPPGFRFHPTDEELVVQYLKRKAYSCPLPA-SIIPEVDVCKADPWDLPGD---LEQERYFFSTREAKYPNGNRSNRATVSGYWKATGIDKQI 101 79**************************.89***********54...46799****************************** PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ ++++vg+kktLvfy+g+ p+g++tdW+mheyrl GSVIVT01000940001 102 VASkGNQVVGMKKTLVFYRGKPPHGSRTDWIMHEYRL 138 99857778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.22E-59	10	170	IPR003441	NAC domain
PROSITE profile	PS51005	57.712	14	170	IPR003441	NAC domain
Pfam	PF02365	8.1E-27	15	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0009737	Biological Process	response to abscisic acid
GO:0010089	Biological Process	xylem development
GO:0010150	Biological Process	leaf senescence
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MEKLNFVKNG VLRLPPGFRF HPTDEELVVQ YLKRKAYSCP LPASIIPEVD VCKADPWDLP 60 GDLEQERYFF STREAKYPNG NRSNRATVSG YWKATGIDKQ IVASKGNQVV GMKKTLVFYR 120 GKPPHGSRTD WIMHEYRLVG AETTPQRKSS TTQSSMAQAE NWVLCRIFLK KRGTKNDEEM 180 MQTNNENRVV QKLRSSRPVF YDFLTRGRDD TNLASSNSSG SSGITEVSNT ESEEHEESSS 240 CNSFSPFRRK P*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-53	12	171	15	166	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-53	12	171	15	166	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-53	12	171	15	166	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-53	12	171	15	166	NO APICAL MERISTEM PROTEIN
3swm_A	5e-53	12	171	18	169	NAC domain-containing protein 19
3swm_B	5e-53	12	171	18	169	NAC domain-containing protein 19
3swm_C	5e-53	12	171	18	169	NAC domain-containing protein 19
3swm_D	5e-53	12	171	18	169	NAC domain-containing protein 19
3swp_A	5e-53	12	171	18	169	NAC domain-containing protein 19
3swp_B	5e-53	12	171	18	169	NAC domain-containing protein 19
3swp_C	5e-53	12	171	18	169	NAC domain-containing protein 19
3swp_D	5e-53	12	171	18	169	NAC domain-containing protein 19
4dul_A	4e-53	12	171	15	166	NAC domain-containing protein 19
4dul_B	4e-53	12	171	15	166	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.7538	0.0	bud\| fruit\| inflorescence\| leaf\| pedicel

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269\|PubMed:20388856}.
Uniprot	TISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00507	DAP	Transfer from AT5G13180	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FQ393624	0.0	FQ393624.1 Vitis vinifera clone SS0AFA25YB11.
GenBank	FQ396394	0.0	FQ396394.1 Vitis vinifera clone SS0AFA10YA21.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002264588.1	0.0	PREDICTED: NAC domain-containing protein 83
Swissprot	Q9FY93	1e-102	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	D7U600	0.0	D7U600_VITVI; Uncharacterized protein
STRING	VIT_01s0146g00280.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	3e-99	NAC domain containing protein 83

Link Out ? help Back to Top
Phytozome	GSVIVT01000940001
Entrez Gene	100259233

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]