PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01000802001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 364aa MW: 41795.3 Da PI: 10.3486 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98.4 | 2.8e-31 | 98 | 147 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+ GSVIVT01000802001 98 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 147 79***********************************************8 PP | |||||||
2 | K-box | 109.4 | 4e-36 | 165 | 262 | 3 | 100 |
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 +s++ s++ea+a+ +qqe++kL+++i+ +q+ +Rh+lGe L+sL++keL++Le++Lek++++iRskKnell+++ie++qk+e elq+ n L GSVIVT01000802001 165 SSNTGSVSEANAQFYQQEASKLRRQIRDIQNLNRHILGEALSSLNFKELKNLETRLEKGISRIRSKKNELLFAEIEYMQKREIELQNSNLFL 256 3445559************************************************************************************* PP K-box 95 rkklee 100 r++++e GSVIVT01000802001 257 RAQIAE 262 ***986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.1E-42 | 90 | 149 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 34.132 | 90 | 150 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.19E-32 | 91 | 163 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.57E-43 | 91 | 167 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 92 | 146 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-32 | 92 | 112 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.7E-26 | 99 | 146 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-32 | 112 | 127 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-32 | 127 | 148 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 7.1E-26 | 174 | 260 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.046 | 176 | 266 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0090376 | Biological Process | seed trichome differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MKASQLQIQK VKNMRGPLVL NKPFPFSATL LCRTIPKNRV NSTRGEKKKE KIVVSTLVYL 60 LLLSFLTSSF QLSTTEFPNQ ASEGSSQRKM GRGKIEIKRI ENTTNRQVTF CKRRNGLLKK 120 AYELSVLCDA EVALIVFSSR GRLYEYANNS VRTTIERYKK VCSDSSNTGS VSEANAQFYQ 180 QEASKLRRQI RDIQNLNRHI LGEALSSLNF KELKNLETRL EKGISRIRSK KNELLFAEIE 240 YMQKREIELQ NSNLFLRAQI AENERAQQQM NLMPGSQYES VPQQPYDSQN LLPVNLLDPN 300 HHYSRHDQTA LQLVTICLLY LYLKTYFSSI LKINKLMKYH FIVALSYNGL VRSGAVFVGL 360 FVE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 7e-20 | 90 | 158 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 7e-20 | 90 | 158 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_R | 7e-20 | 90 | 158 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_S | 7e-20 | 90 | 158 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_A | 7e-20 | 90 | 158 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_B | 7e-20 | 90 | 158 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_C | 7e-20 | 90 | 158 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_D | 7e-20 | 90 | 158 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_E | 7e-20 | 90 | 158 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_F | 7e-20 | 90 | 158 | 1 | 69 | Myocyte-specific enhancer factor 2B |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.135 | 0.0 | flower| fruit| inflorescence| pedicel |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|PubMed:11414613}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF265562 | 0.0 | AF265562.1 Vitis vinifera MAD-box transcripion factor (mads1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010656928.1 | 1e-177 | PREDICTED: MAD-box transcripion factor isoform X2 | ||||
Refseq | XP_019078770.1 | 1e-177 | PREDICTED: MAD-box transcripion factor isoform X3 | ||||
Swissprot | Q93XH4 | 1e-164 | MADS1_VITVI; Agamous-like MADS-box protein MADS1 | ||||
TrEMBL | A0A2R6QZ11 | 1e-143 | A0A2R6QZ11_ACTCH; Floral homeotic protein like (Fragment) | ||||
STRING | VIT_12s0142g00360.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58780.1 | 1e-118 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01000802001 |
Publications ? help Back to Top | |||
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