PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01000802001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MIKC_MADS
Protein Properties Length: 364aa    MW: 41795.3 Da    PI: 10.3486
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01000802001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.42.8e-3198147150
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
             SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                        krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  GSVIVT01000802001  98 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 147
                        79***********************************************8 PP
2K-box109.44e-361652623100
              K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                        +s++ s++ea+a+ +qqe++kL+++i+ +q+ +Rh+lGe L+sL++keL++Le++Lek++++iRskKnell+++ie++qk+e elq+ n  L
  GSVIVT01000802001 165 SSNTGSVSEANAQFYQQEASKLRRQIRDIQNLNRHILGEALSSLNFKELKNLETRLEKGISRIRSKKNELLFAEIEYMQKREIELQNSNLFL 256
                        3445559************************************************************************************* PP

              K-box  95 rkklee 100
                        r++++e
  GSVIVT01000802001 257 RAQIAE 262
                        ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-4290149IPR002100Transcription factor, MADS-box
PROSITE profilePS5006634.13290150IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.19E-3291163IPR002100Transcription factor, MADS-box
CDDcd002653.57E-4391167No hitNo description
PROSITE patternPS00350092146IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-3292112IPR002100Transcription factor, MADS-box
PfamPF003191.7E-2699146IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-32112127IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-32127148IPR002100Transcription factor, MADS-box
PfamPF014867.1E-26174260IPR002487Transcription factor, K-box
PROSITE profilePS5129715.046176266IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MKASQLQIQK VKNMRGPLVL NKPFPFSATL LCRTIPKNRV NSTRGEKKKE KIVVSTLVYL  60
LLLSFLTSSF QLSTTEFPNQ ASEGSSQRKM GRGKIEIKRI ENTTNRQVTF CKRRNGLLKK  120
AYELSVLCDA EVALIVFSSR GRLYEYANNS VRTTIERYKK VCSDSSNTGS VSEANAQFYQ  180
QEASKLRRQI RDIQNLNRHI LGEALSSLNF KELKNLETRL EKGISRIRSK KNELLFAEIE  240
YMQKREIELQ NSNLFLRAQI AENERAQQQM NLMPGSQYES VPQQPYDSQN LLPVNLLDPN  300
HHYSRHDQTA LQLVTICLLY LYLKTYFSSI LKINKLMKYH FIVALSYNGL VRSGAVFVGL  360
FVE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P7e-2090158169Myocyte-specific enhancer factor 2B
1tqe_Q7e-2090158169Myocyte-specific enhancer factor 2B
1tqe_R7e-2090158169Myocyte-specific enhancer factor 2B
1tqe_S7e-2090158169Myocyte-specific enhancer factor 2B
6c9l_A7e-2090158169Myocyte-specific enhancer factor 2B
6c9l_B7e-2090158169Myocyte-specific enhancer factor 2B
6c9l_C7e-2090158169Myocyte-specific enhancer factor 2B
6c9l_D7e-2090158169Myocyte-specific enhancer factor 2B
6c9l_E7e-2090158169Myocyte-specific enhancer factor 2B
6c9l_F7e-2090158169Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.1350.0flower| fruit| inflorescence| pedicel
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|PubMed:11414613}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2655620.0AF265562.1 Vitis vinifera MAD-box transcripion factor (mads1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010656928.11e-177PREDICTED: MAD-box transcripion factor isoform X2
RefseqXP_019078770.11e-177PREDICTED: MAD-box transcripion factor isoform X3
SwissprotQ93XH41e-164MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBLA0A2R6QZ111e-143A0A2R6QZ11_ACTCH; Floral homeotic protein like (Fragment)
STRINGVIT_12s0142g00360.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.11e-118MIKC_MADS family protein
Publications ? help Back to Top
  1. Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR
    A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development.
    Plant Mol. Biol., 2001. 45(5): p. 541-53
    [PMID:11414613]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]