PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01000771001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 486aa    MW: 54700.6 Da    PI: 6.9379
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01000771001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.7e-13309355455
                        HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  GSVIVT01000771001 309 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYITDLQ 355
                        799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.8E-3950220IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.085305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.62E-14308359No hitNo description
SuperFamilySSF474596.02E-19308377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-10309355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-18309374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-14311360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MGEKFWLNEE EKAMVESVLG AEGWEFLISC ASDKTHLSES GVASSDGGVQ KGLRQLVEGS  60
NWSYAIFWRV SRVKDVLIWG DGYCREAKGE VGDGGLEEVG KKKEVLKKLH EYFGVGEEDK  120
YWAKLDLLSN IEMFYLTSMF YSFSGDLQYG PALVLKSGRW VWVVDAVGCS DQYRARSVLA  180
RLAGFQTVVF VPVKDGVIEV ASLMLVKEDE NVVKMIKGVF GGMNFGQAKV YPKIFGHELS  240
LGSGAKSRSM SINFAPKLEG DSGFGAESYD VQGLGSNQQP KDDLLPRVDE RKPRKRGRKP  300
ANGREEPLNH VEAERQRREK LNQRFYALRA VVPNISKMDK ASLLGDAISY ITDLQMKIRI  360
LEAEKEIVNN KQNQSPVPQI DFQDRQEDTV VRVSCPLDAH PVSRVIKTLK EHQVVAPEAE  420
VSTMENDKVL HTFSIRTQTG AAECLKEKLK NMETHRCWRI GVWYLIFNEF YMTSDCSFKL  480
LQPIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-28303371270Transcription factor MYC2
5gnj_B1e-28303371270Transcription factor MYC2
5gnj_E1e-28303371270Transcription factor MYC2
5gnj_F1e-28303371270Transcription factor MYC2
5gnj_G1e-28303371270Transcription factor MYC2
5gnj_I1e-28303371270Transcription factor MYC2
5gnj_M1e-28303371270Transcription factor MYC2
5gnj_N1e-28303371270Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1290298RKPRKRGRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.35210.0bud| fruit| inflorescence| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4866110.0AM486611.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X034836.3, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282584.20.0PREDICTED: transcription factor bHLH3
SwissprotO234871e-170BH003_ARATH; Transcription factor bHLH3
TrEMBLA0A438I6I90.0A0A438I6I9_VITVI; Transcription factor bHLH3
TrEMBLF6GXN40.0F6GXN4_VITVI; Uncharacterized protein
STRINGVIT_07s0141g01060.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP94301012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-164bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  3. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]