PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01000620001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | ERF | ||||||||
Protein Properties | Length: 106aa MW: 12531.1 Da PI: 10.928 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 24 | 9.8e-08 | 65 | 95 | 1 | 35 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgk 35 + y+GVr++ + Wv+e+r+p +k+ r++lg+ GSVIVT01000620001 65 PVYRGVRRRN-GNMWVCELREP---NKKSRIWLGT 95 68****9777.899*******8...347******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 11.127 | 66 | 97 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-6 | 66 | 95 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.1E-12 | 66 | 95 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 106 aa Download sequence Send to blast |
MDFFNQFCNS YPFPSDSHSV STPESSSASD WQTRRTIQSD EEVLRASDRP KKRACRRKFK 60 ETRHPVYRGV RRRNGNMWVC ELREPNKKSR IWLGTTPWRL GGKYF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.27702 | 3e-68 | flower |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM439845 | 1e-151 | AM439845.2 Vitis vinifera contig VV78X197307.7, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002276153.1 | 1e-61 | PREDICTED: dehydration-responsive element-binding protein 1E | ||||
Swissprot | Q9LN86 | 2e-22 | DRE1F_ARATH; Dehydration-responsive element-binding protein 1F | ||||
TrEMBL | A0A1X9K4G7 | 8e-65 | A0A1X9K4G7_VITVI; CBF-like transcription factor | ||||
TrEMBL | A0A1X9K693 | 8e-65 | A0A1X9K693_VITRI; CBF-like transcription factor | ||||
STRING | VIT_02s0025g04460.t01 | 3e-61 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12610.1 | 9e-25 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01000620001 |
Publications ? help Back to Top | |||
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