PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01000386001 | ||||||||
Common Name | LOC100243782, VIT_17s0000g00810, VITISV_000774 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | ZF-HD | ||||||||
Protein Properties | Length: 119aa MW: 13305 Da PI: 8.3878 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 91.2 | 9.4e-29 | 4 | 56 | 4 | 59 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 Y+eCl+NhAaslG++a+DGCgEf+ + +++ +l CaACgCHRnFHR+ ++ GSVIVT01000386001 4 ELYRECLRNHAASLGSYATDGCGEFTLD---ATSPGGLLCAACGCHRNFHRKLISN 56 68************************98...5689*****************8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 8.6E-24 | 5 | 52 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 6.0E-17 | 6 | 52 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 23.095 | 6 | 53 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 9.0E-24 | 6 | 52 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 3.85E-9 | 42 | 104 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.2E-21 | 45 | 106 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 9.0E-23 | 47 | 104 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence Send to blast |
MEGELYRECL RNHAASLGSY ATDGCGEFTL DATSPGGLLC AACGCHRNFH RKLISNQKEK 60 MLAFAEKIRW KMQRKEEEDE IERFCRGVGV SRQVFKVWMH NHKNSSSSSS SASTTLTQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-16 | 47 | 109 | 18 | 79 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM479560 | 1e-102 | AM479560.2 Vitis vinifera contig VV78X074758.3, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002263466.1 | 8e-71 | PREDICTED: zinc-finger homeodomain protein 1 | ||||
Swissprot | A2XLF4 | 3e-21 | ZHD11_ORYSI; Zinc-finger homeodomain protein 11 | ||||
Swissprot | Q10DV5 | 3e-21 | ZHD11_ORYSJ; Zinc-finger homeodomain protein 11 | ||||
TrEMBL | A5C2A7 | 2e-69 | A5C2A7_VITVI; Uncharacterized protein | ||||
STRING | VIT_17s0000g00810.t01 | 3e-70 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP91 | 16 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28920.1 | 9e-20 | homeobox protein 34 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01000386001 |
Entrez Gene | 100243782 |
Publications ? help Back to Top | |||
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