PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01000232001

Common Name

VIT_07s0130g00040

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

MYB

Protein Properties

Length: 271aa MW: 30485.1 Da PI: 9.3595

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01000232001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55	1.9e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ ++k +G g+W++ ++ g+ R++k+c++rw +yl GSVIVT01000232001 14 KGAWTKEEDQRLIAYIKTHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	55.7	1.1e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T eEdel+++++ +G++ W++Ia +++ gRt++++k++w+++ GSVIVT01000232001 67 RGNFTDEEDELIINLHSFFGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.47	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.47E-29	13	108	IPR009057	Homeodomain-like
SMART	SM00717	4.6E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-15	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.1E-24	15	68	IPR009057	Homeodomain-like
CDD	cd00167	3.74E-11	16	61	No hit	No description
PROSITE profile	PS51294	27.04	62	116	IPR017930	Myb domain
SMART	SM00717	6.5E-17	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.5E-15	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	2.98E-12	69	112	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.2E-28	69	116	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MGRSPCCEKE HTNKGAWTKE EDQRLIAYIK THGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TDEEDELIIN LHSFFGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLYSRG 120 IDPQTHRPLS SAASTAATSA TINNSKRSNS TSKNTSNSES EAAKTPPYSN SSSGVTTEEL 180 YPQLNLELSI GLPHRPQIQA TNVKEPKKQP QEQLPFQFFG ASSASTKNHQ SSCFCQNLGY 240 QNKTQECNCK SVTRMIPADD LYRYYTALDS *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-29	14	116	7	108	B-MYB
1h8a_C	5e-29	13	116	26	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269\|PubMed:1840903}.
Uniprot	TISSUE SPECIFICITY: Expressed in flowers and weakly in roots and stems. {ECO:0000269\|PubMed:1840903}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM447361	1e-174	AM447361.2 Vitis vinifera contig VV78X015601.2, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019076420.1	0.0	PREDICTED: myb-related protein 308-like
Swissprot	P81395	7e-96	MYB30_ANTMA; Myb-related protein 330
TrEMBL	A0A438KKB0	0.0	A0A438KKB0_VITVI; Myb-related protein 330
TrEMBL	F6HGI1	0.0	F6HGI1_VITVI; Uncharacterized protein
STRING	VIT_07s0130g00040.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	3e-87	myb domain protein 4

Link Out ? help Back to Top
Phytozome	GSVIVT01000232001

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]