PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01000142001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GRAS
Protein Properties Length: 163aa    MW: 17896.4 Da    PI: 7.5436
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01000142001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS66.94e-21531542100
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalkl..fsevs 88 
                        ++lL++cA+a++s+d++laq++L+ l+++a pdgd++qRl+  f++AL ar a+  s+++k +++ ++++ n    ++++++ +l  f++++
  GSVIVT01000142001  53 EQLLVHCANAIESNDATLAQQILWVLNNIAPPDGDSNQRLTCGFLRALIARAAN--SGTCKMFTAMANAHANlaiNTHKFSVIELasFVDLT 142
                        79***************************************************9..7777777666666666444555555555588***** PP

               GRAS  89 PilkfshltaNq 100
                        P+++f++ +aN+
  GSVIVT01000142001 143 PWHRFGFAAANK 154
                        ***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098513.02726162IPR005202Transcription factor GRAS
PfamPF035141.4E-1853154IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MMQFTETPPP PLHQITSFSN LPMNNNQIHR TRPWPGFPTS KALGSFGDAN CMEQLLVHCA  60
NAIESNDATL AQQILWVLNN IAPPDGDSNQ RLTCGFLRAL IARAANSGTC KMFTAMANAH  120
ANLAINTHKF SVIELASFVD LTPWHRFGFA AANKCQFPEH YV*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4308260.0AM430826.2 Vitis vinifera contig VV78X021094.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002279517.31e-108PREDICTED: scarecrow-like protein 32
SwissprotQ9SN225e-42SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A438FBS91e-107A0A438FBS9_VITVI; Scarecrow-like protein 32
TrEMBLA0A438KQL41e-107A0A438KQL4_VITVI; Scarecrow-like protein 32
TrEMBLA5ANJ01e-107A5ANJ0_VITVI; Uncharacterized protein
STRINGVIT_07s0129g00340.t011e-108(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP24991534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.12e-44GRAS family protein