PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01000141001 | ||||||||
Common Name | LOC100261250, VIT_07s0129g00330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | LBD | ||||||||
Protein Properties | Length: 229aa MW: 24833.5 Da PI: 8.0408 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 97.6 | 1.3e-30 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C++C+vlr++C+++C+l+p++ +++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA+ r+ +Pv+Gavg++ ++++++ GSVIVT01000141001 2 SCNGCRVLRKGCSESCILRPCLqwiesAESQGHATVFVAKFFGRAGLMSFISAVPENQRPALFRSLLYEACGRTVNPVNGAVGLLGTGNWHV 93 6*********************9999777889************************************************************ PP DUF260 88 eqlkaelall 97 +q++ e++l+ GSVIVT01000141001 94 CQAAMETVLR 103 ****998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.769 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.1E-26 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MSCNGCRVLR KGCSESCILR PCLQWIESAE SQGHATVFVA KFFGRAGLMS FISAVPENQR 60 PALFRSLLYE ACGRTVNPVN GAVGLLGTGN WHVCQAAMET VLRGGTLRAM PELLNGVSTP 120 ECDEASEAEV TCTDMFKLRD PNSSSRSKVP KRKRLEEASK VQCTDLDLRL TPGLTGKISS 180 RGLGAMSYLP ETRRPGTPSM NSEESVTTTC FETPHSPEGE RKLLNLFL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.7626 | 0.0 | fruit| inflorescence| leaf| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ386115 | 0.0 | FQ386115.1 Vitis vinifera clone SS0AEB2YP15. | |||
GenBank | FQ387674 | 0.0 | FQ387674.1 Vitis vinifera clone SS0AEB25YK23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002284296.1 | 1e-167 | PREDICTED: LOB domain-containing protein 38 | ||||
Swissprot | Q9SN23 | 6e-83 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | D7TT88 | 1e-166 | D7TT88_VITVI; Uncharacterized protein | ||||
STRING | VIT_07s0129g00330.t01 | 1e-167 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP403 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37540.1 | 3e-81 | LOB domain-containing protein 39 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01000141001 |
Entrez Gene | 100261250 |