PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01000012001
Common NameLOC100261443, VIT_14s0128g00110
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 324aa    MW: 36455.8 Da    PI: 5.8111
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01000012001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.4e-13127178155
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  GSVIVT01000012001 127 QRMTHIAVERNRRKQMNEYLSVLRSLMPES---YVQRGDQASIIGGAINFVKELE 178
                        79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.9E-14125182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.46E-14125182No hitNo description
PROSITE profilePS5088815.402126177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-16126192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-10127178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-10132183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MALEAVVFQQ DLFGYNGKDL YSLFGGNWSC EFGLEKEDEK SCCFDTLESQ TETSHHYENW  60
NSPSQPPPPS IVPHLNEWHH HNSSPEGLIP KQVPEFDSTL PTATSSSSRP KRRRSKSKKN  120
QEEIENQRMT HIAVERNRRK QMNEYLSVLR SLMPESYVQR GDQASIIGGA INFVKELEQR  180
LQWLGGQKEK ENGEAGSSAP FSEFFTFPQY STSSTVSDNS VSMADTVGGN QAVIADIEVT  240
MVESHANLKI RSRRRPKQLL RMVSGLQSLH LTILHLNVTT IDQTVLYSLS VKVEDDCKLT  300
SVDDIATAVY QMLGRIQEEA MIN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112118RRSKSKK
2127138RMTHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.183780.0bud| inflorescence
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4858630.0AM485863.2 Vitis vinifera contig VV78X212429.8, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281083.20.0PREDICTED: transcription factor bHLH94
SwissprotQ9C7T45e-79BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A438KCJ30.0A0A438KCJ3_VITVI; Transcription factor bHLH96
TrEMBLD7U1X50.0D7U1X5_VITVI; Uncharacterized protein
STRINGVIT_14s0128g00110.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.19e-79bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]