PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vun012236 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | DBB | ||||||||
Protein Properties | Length: 193aa MW: 21254.1 Da PI: 7.5024 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24.1 | 7.3e-08 | 4 | 44 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38 C+ ++e++++lfC+ ++ lC+dC H+ H+ Vun012236 4 QCDVCNENHASLFCTADEAALCDDCDHRVHHAnklaskhHR 44 7****************************644478888665 PP | |||||||
2 | zf-B_box | 29 | 2.1e-09 | 56 | 87 | 4 | 35 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHk 35 ++C+ ++ek++ fC++++ lC+dC +++H+ Vun012236 56 PVCDVCQEKRAFVFCQQDRAILCKDCDVSIHS 87 68*****************************4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.694 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.08E-6 | 3 | 47 | No hit | No description |
SMART | SM00336 | 3.2E-6 | 4 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 5.3E-6 | 4 | 42 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.5E-15 | 53 | 100 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.068 | 53 | 100 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.55E-8 | 56 | 100 | No hit | No description |
Pfam | PF00643 | 1.9E-7 | 56 | 96 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MKIQCDVCNE NHASLFCTAD EAALCDDCDH RVHHANKLAS KHHRFSLTHP SAKHFPVCDV 60 CQEKRAFVFC QQDRAILCKD CDVSIHSVNE LTKNHSRFLL TGIKFSTSAM PYSSSSSPKK 120 NPNPLLVTSH APSNPPSTPS PPKPGGILQT NQAPGFTGSS ISEYLINTIP GMKFEDFLDP 180 HPTFDCSKVS FIN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027901909.1 | 1e-135 | B-box zinc finger protein 21-like | ||||
Swissprot | Q9LQZ7 | 2e-58 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A4D6NUK7 | 1e-134 | A0A4D6NUK7_VIGUN; Zinc finger protein CONSTANS | ||||
STRING | XP_007136054.1 | 4e-94 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 7e-57 | salt tolerance homolog2 |