PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun011787
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TALE
Protein Properties Length: 125aa    MW: 15035.1 Da    PI: 10.0255
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45922413PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.33.4e-1055892155
               HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
   Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55
               k +yps+++++ LA+++gL+ +q+ +WF N+R ++
  Vun011787 55 KWPYPSESQKQALAESTGLDLKQINNWFINQRKRH 89
               569*****************************985 PP

2ELK40.27.1e-14930122
        ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
               ELK qLlrKYsgyLgsLk+EF+
  Vun011787  9 ELKVQLLRKYSGYLGSLKKEFL 30
               9********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037895.3E-10930IPR005539ELK domain
SMARTSM011887.1E-7930IPR005539ELK domain
PROSITE profilePS5121311.139929IPR005539ELK domain
PROSITE profilePS5007112.2282992IPR001356Homeobox domain
SuperFamilySSF466892.57E-2031103IPR009057Homeodomain-like
SMARTSM003892.8E-123196IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.6E-293495IPR009057Homeodomain-like
CDDcd000867.87E-124193No hitNo description
PfamPF059205.9E-184988IPR008422Homeobox KN domain
PROSITE patternPS0002706790IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
XDTQAEDREL KVQLLRKYSG YLGSLKKEFL KKKKNGKLPK EARQQLLDWW NRHYKWPYPS  60
ESQKQALAES TGLDLKQINN WFINQRKRHW KPSEDMQFAV MDATNYYMEN VMCKPFPMDG  120
MPMLL
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
UniProtRequired for shoot apical meristem (SAM) formation during embryogenesis. Negatively regulates ASYMMETRIC LEAVES1 (AS1) and ASYMMETRIC LEAVES2 (AS2 or LBD6). Probably binds to the DNA sequence 5'-TGAC-3'. Binds to RNA (By similarity). {ECO:0000250|UniProtKB:P24345, ECO:0000269|PubMed:10079219, ECO:0000269|PubMed:11934861}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027332206.19e-89homeobox protein knotted-1-like LET6
SwissprotP466081e-60HSBH1_SOYBN; Homeobox protein SBH1
SwissprotQ388741e-60STM_ARATH; Homeobox protein SHOOT MERISTEMLESS
TrEMBLA0A0L9UV652e-87A0A0L9UV65_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RK692e-87A0A0S3RK69_PHAAN; Uncharacterized protein
STRINGXP_007141628.15e-88(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.13e-58KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Zhang XL,Yang ZP,Zhang J,Zhang LG
    Ectopic expression of BraYAB1-702, a member of YABBY gene family in Chinese cabbage, causes leaf curling, inhibition of development of shoot apical meristem and flowering stage delaying in Arabidopsis thaliana.
    Int J Mol Sci, 2013. 14(7): p. 14872-91
    [PMID:23863694]
  2. Liu C, et al.
    Phosphatidylserine synthase 1 is required for inflorescence meristem and organ development in Arabidopsis.
    J Integr Plant Biol, 2013. 55(8): p. 682-95
    [PMID:23931744]
  3. Simonini S,Kater MM
    Class I BASIC PENTACYSTEINE factors regulate HOMEOBOX genes involved in meristem size maintenance.
    J. Exp. Bot., 2014. 65(6): p. 1455-65
    [PMID:24482368]
  4. Scofield S,Dewitte W,Murray JA
    STM sustains stem cell function in the Arabidopsis shoot apical meristem and controls KNOX gene expression independently of the transcriptional repressor AS1.
    Plant Signal Behav, 2018.
    [PMID:24776954]
  5. Kamiuchi Y,Yamamoto K,Furutani M,Tasaka M,Aida M
    The CUC1 and CUC2 genes promote carpel margin meristem formation during Arabidopsis gynoecium development.
    Front Plant Sci, 2014. 5: p. 165
    [PMID:24817871]
  6. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  7. Lee JE,Lampugnani ER,Bacic A,Golz JF
    SEUSS and SEUSS-LIKE 2 coordinate auxin distribution and KNOXI activity during embryogenesis.
    Plant J., 2014. 80(1): p. 122-35
    [PMID:25060324]
  8. Ckurshumova W,Berleth T
    Overcoming recalcitrance - Auxin response factor functions in plant regeneration.
    Plant Signal Behav, 2015. 10(7): p. e993293
    [PMID:26098229]
  9. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]
  10. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  11. Rast-Somssich MI, et al.
    Alternate wiring of a KNOXI genetic network underlies differences in leaf development of A. thaliana and C. hirsuta.
    Genes Dev., 2015. 29(22): p. 2391-404
    [PMID:26588991]
  12. Landrein B, et al.
    Mechanical stress contributes to the expression of the STM homeobox gene in Arabidopsis shoot meristems.
    Elife, 2015. 4: p. e07811
    [PMID:26623515]
  13. Guzmán-López JA,Abraham-Juárez MJ,Lozano-Sotomayor P,de Folter S,Simpson J
    Arabidopsis thaliana gonidialess A/Zuotin related factors (GlsA/ZRF) are essential for maintenance of meristem integrity.
    Plant Mol. Biol., 2016. 91(1-2): p. 37-51
    [PMID:26826012]
  14. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]
  15. Lee HG,Choi YR,Seo PJ
    Increased STM expression is associated with drought tolerance in Arabidopsis.
    J. Plant Physiol., 2016. 201: p. 79-84
    [PMID:27448723]
  16. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  17. Singh S, et al.
    Sirtinol, a Sir2 protein inhibitor, affects stem cell maintenance and root development in Arabidopsis thaliana by modulating auxin-cytokinin signaling components.
    Sci Rep, 2017. 7: p. 42450
    [PMID:28195159]
  18. Lee HG,Choi YR,Seo PJ
    Erratum to "Increased STM expression is associated with drought tolerance in Arabidopsis" [J. Plant Physiol. 201 (2016) 79-84].
    J. Plant Physiol., 2018. 228: p. 218
    [PMID:28456397]
  19. Xue T, et al.
    ARGONAUTE10 Inhibits In Vitro Shoot Regeneration Via Repression of miR165/166 in Arabidopsis thaliana.
    Plant Cell Physiol., 2017. 58(10): p. 1789-1800
    [PMID:29016889]
  20. Dolzblasz A, et al.
    Impairment of Meristem Proliferation in Plants Lacking the Mitochondrial Protease AtFTSH4.
    Int J Mol Sci, 2018.
    [PMID:29538317]
  21. Scofield S, et al.
    Coordination of meristem and boundary functions by transcription factors in the SHOOT MERISTEMLESS regulatory network.
    Development, 2018.
    [PMID:29650590]
  22. Liu L, et al.
    FTIP-Dependent STM Trafficking Regulates Shoot Meristem Development in Arabidopsis.
    Cell Rep, 2018. 23(6): p. 1879-1890
    [PMID:29742441]
  23. Chung Y, et al.
    Auxin Response Factors promote organogenesis by chromatin-mediated repression of the pluripotency gene SHOOTMERISTEMLESS.
    Nat Commun, 2019. 10(1): p. 886
    [PMID:30792395]