PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vun011558 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Trihelix | ||||||||
Protein Properties | Length: 140aa MW: 15704.4 Da PI: 8.2054 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 95.8 | 4e-30 | 42 | 127 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k+e++aL+++r++m+ ++r+++ k+plW++vskk++e g++rs+k+Ckek+en+ k+++++keg+ ++ s+ s+t+++f+qlea Vun011558 42 RWPKEETMALLKIRSDMDVAFRDTNPKAPLWDQVSKKLAEAGYNRSAKKCKEKFENIYKYHRRTKEGRCGK-SNGSKTYRFFEQLEA 127 8********************************************************************86.78889********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.573 | 35 | 99 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.9E-4 | 39 | 101 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 2.31E-24 | 41 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-4 | 41 | 100 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 4.6E-20 | 41 | 128 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MLEVYTSPET PLENPEGGAA AVSEGMKAED GEGGDRNSAA SRWPKEETMA LLKIRSDMDV 60 AFRDTNPKAP LWDQVSKKLA EAGYNRSAKK CKEKFENIYK YHRRTKEGRC GKSNGSKTYR 120 FFEQLEALEG HHSLLTPSVX |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027903988.1 | 5e-97 | trihelix transcription factor GTL1-like | ||||
Swissprot | Q39117 | 6e-40 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | A0A4D6NU26 | 1e-95 | A0A4D6NU26_VIGUN; Uncharacterized protein | ||||
STRING | XP_007137690.1 | 2e-80 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 5e-45 | Trihelix family protein |