PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun011441
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 147aa    MW: 16161.2 Da    PI: 10.1264
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45952964PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.94.7e-0890135447
                      S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                      W+  Ed  l++a k ++++   +W+++a+ ++ gR+   c  r+  +
        Vun011441  90 WSSGEDIALLNALKVFPKDvsmRWEKVAAAVP-GRSKAACMRRFTEL 135
                      ********************************.*********99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071732148IPR001005SANT/Myb domain
PROSITE profilePS512939.0985140IPR017884SANT domain
SuperFamilySSF466891.56E-1186137IPR009057Homeodomain-like
SMARTSM007178.1E-586138IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-688136IPR009057Homeodomain-like
PfamPF002494.3E-790135IPR001005SANT/Myb domain
CDDcd001678.00E-790136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
XEDVEVLKKQ LVKNPVGKPG RWEAIAAAFG GRHGVESVIK KAKELGEKKV DDSDSYALFL  60
KNRKTLDKRV VEENGGEDSV TVDKAVDNGW SSGEDIALLN ALKVFPKDVS MRWEKVAAAV  120
PGRSKAACMR RFTELKKGFR NAKAANE
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of root hair development, possibly through auxin signaling. Its endoplasmic reticulum membrane localization is not compatible with its transcription factor activity in the nucleus. May be cleaved to target the nucleus. {ECO:0000269|PubMed:21477080}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21477080}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027919701.11e-98transcription factor MAMYB
SwissprotQ9ASQ28e-62MAMYB_ARATH; Transcription factor MAMYB
TrEMBLA0A4D6L8L52e-97A0A4D6L8L5_VIGUN; DnaJ-like protein subfamily C member 2
STRINGXP_007159816.12e-87(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.13e-64MYB_related family protein