PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vun011324 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NF-YB | ||||||||
Protein Properties | Length: 153aa MW: 17101 Da PI: 4.8413 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 39.1 | 1.8e-12 | 7 | 100 | 6 | 94 |
NF-YB 6 rflPianvsrimkkvlP...anak..iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 +lP + v r++k l +++ +skd e fi ++++ a+d c++ kr+ +n++d++ al + f +++ plk+ l+++r+ + Vun011324 7 DELPRSIVRRVVKDKLSrcsEEGEisVSKDGLLAFSESGRIFIHYLSATANDICKESKRQIVNAEDVFKALEETEFSEFIRPLKASLEEFRKKN 100 5688888999999888622234541156788888899999***************************************************865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 6.8E-30 | 7 | 137 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.6E-7 | 8 | 77 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 2.55E-22 | 9 | 125 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
NRMAEADELP RSIVRRVVKD KLSRCSEEGE ISVSKDGLLA FSESGRIFIH YLSATANDIC 60 KESKRQIVNA EDVFKALEET EFSEFIRPLK ASLEEFRKKN VGKKAAVGKG KEEEQRKKRK 120 LEAESSDKGE ASINDESSDK AEGSDKGEGE DDE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5y26_A | 2e-12 | 9 | 126 | 18 | 130 | DNA polymerase epsilon subunit D |
5y27_A | 2e-12 | 9 | 126 | 18 | 130 | DNA polymerase epsilon subunit D |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 96 | 118 | RKKNVGKKAAVGKGKEEEQRKKR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027909701.1 | 1e-101 | DNA polymerase epsilon subunit 3 isoform X2 | ||||
TrEMBL | A0A4D6LHN3 | 1e-100 | A0A4D6LHN3_VIGUN; DNA polymerase epsilon subunit 3 | ||||
STRING | XP_007132441.1 | 6e-93 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 1e-40 | nuclear factor Y, subunit B11 |