PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vun011252 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 156aa MW: 17689.6 Da PI: 9.459 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.5 | 1.4e-17 | 32 | 81 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g Vun011252 32 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVFYLRG 81 69*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.64E-21 | 32 | 90 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.1E-37 | 32 | 95 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.207 | 32 | 89 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-30 | 33 | 90 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.6E-11 | 33 | 81 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.23E-28 | 33 | 91 | No hit | No description |
PRINTS | PR00367 | 7.0E-12 | 33 | 44 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.0E-12 | 71 | 91 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MEEEGLRDCC SSNSTTNRNT KKRKQQHHQD KPYRGIRMRK WGKWVAEIRE PNKRSRIWLG 60 SYSTPVAAAR AYDTAVFYLR GPSARLNFPE LLFQDDDVST QEGNMSADCI RKKATQVGAR 120 VDALQTALQS SSSHSANSSH VSSDKPDLNE YPKPED |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-15 | 29 | 89 | 2 | 63 | ATERF1 |
3gcc_A | 1e-15 | 29 | 89 | 2 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027942214.1 | 1e-115 | ethylene-responsive transcription factor RAP2-1-like | ||||
Swissprot | Q8LC30 | 6e-51 | RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1 | ||||
Swissprot | Q9FH94 | 1e-50 | ERF10_ARATH; Ethylene-responsive transcription factor ERF010 | ||||
TrEMBL | A0A4D6NRN8 | 1e-114 | A0A4D6NRN8_VIGUN; EREBP-like factor | ||||
STRING | GLYMA04G04355.2 | 1e-85 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67190.1 | 3e-52 | DREB and EAR motif protein 2 |
Publications ? help Back to Top | |||
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