PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vun010147 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | DBB | ||||||||
Protein Properties | Length: 203aa MW: 22447.7 Da PI: 8.0586 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.2 | 3e-07 | 17 | 47 | 4 | 34 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeH 34 + C+ +e+ ++ fC ++ lC+ C + H Vun010147 17 TLCDACESAAAIVFCAADEAALCRACDKKVH 47 57*************************9998 PP | |||||||
2 | zf-B_box | 31.2 | 4.4e-10 | 66 | 106 | 2 | 38 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38 + ++C+ +e+ ++ ++Ce++++ lC +C + H g H+ Vun010147 66 DVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGgkrtHE 106 5799**************************99966666776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.826 | 14 | 61 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.8E-9 | 14 | 61 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.60E-6 | 17 | 59 | No hit | No description |
Pfam | PF00643 | 1.2E-5 | 17 | 55 | IPR000315 | B-box-type zinc finger |
SuperFamily | SSF57845 | 9.39E-6 | 62 | 101 | No hit | No description |
PROSITE profile | PS50119 | 9.527 | 65 | 110 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.2E-11 | 65 | 110 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 5.5E-8 | 66 | 106 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.77E-8 | 68 | 107 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 203 aa Download sequence Send to blast |
ENNTPSNSKP STSIMRTLCD ACESAAAIVF CAADEAALCR ACDKKVHMCN KLASRHVRVG 60 LASPSDVPRC DICENAPAFF YCETDGSSLC LQCDMIVHVG GKRTHERYLL FRQRVEFPGD 120 KPGKSENPAS QPLDPGETKR GQNALPKIKM GEKQQNHRMP LILTPEPNAD EHAMMGTKMI 180 DLNMKPQRIH EPTSNNQVRM PGK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014509204.1 | 1e-149 | B-box zinc finger protein 18 isoform X1 | ||||
Swissprot | C0SVM5 | 2e-74 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | A0A4D6KYC1 | 1e-150 | A0A4D6KYC1_VIGUN; Zinc finger protein CONSTANS | ||||
STRING | XP_007156118.1 | 1e-138 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38960.1 | 1e-76 | DBB family protein |