PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun009990

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Protein Properties

Length: 209aa MW: 23795.9 Da PI: 4.4946

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-167a-Vigna_unguiculata-29173	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	98.8	3.3e-31	86	192	1	96
EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k ltpsdv+k++rlv+pk++ae++ ++ + ++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+v+F++++ + Vun009990 86 FEKPLTPSDVGKLNRLVIPKQHAEKYfplsgggggggESGECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFERHRADA 185 99****************************99876333447889**********************************************877677 PP E..EEEE CS B3 90 felvvkv 96 +l++++ Vun009990 186 HRLFIGW 192 7777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.9E-40	77	194	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	5.76E-32	81	190	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.68E-28	84	186	No hit	No description
Pfam	PF02362	7.4E-28	86	192	IPR003340	B3 DNA binding domain
SMART	SM01019	4.1E-23	86	195	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.098	86	194	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MSINHYSMDL PETTLWWPQQ QPHQQQQPML MEATPNRSST SWPSAEPLGL NLNHQNDDME 60 EDEEEEDQTT TTTQQEETED EKEPMFEKPL TPSDVGKLNR LVIPKQHAEK YFPLSGGGGG 120 GGESGECKGL LLSFEDESGK CWRFRYSYWN SSQSYVLTKG WSRYVKDKRL DAGDVVLFER 180 HRADAHRLFI GWEAPANTGD TSPVHVSGX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	1e-47	81	199	3	117	B3 domain-containing transcription factor NGA1
5os9_B	1e-47	81	199	3	117	B3 domain-containing transcription factor NGA1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014511254.1	1e-112	B3 domain-containing protein At2g36080-like
Swissprot	Q8RYD3	8e-60	Y3158_ARATH; B3 domain-containing protein At3g11580
TrEMBL	A0A1S3UZB8	1e-110	A0A1S3UZB8_VIGRR; B3 domain-containing protein At2g36080-like
STRING	GLYMA10G08871.1	5e-89	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11580.2	1e-58	B3 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]