PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vun009287 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | DBB | ||||||||
Protein Properties | Length: 235aa MW: 25363.3 Da PI: 4.9083 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.2 | 6e-07 | 20 | 60 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 + C+ ++ + lfC+ ++ +lC C +++H H+ Vun009287 20 KPCDSCKLASAALFCRPDSAFLCIACDSKIHCAnklasrHE 60 78******99********************95545666665 PP | |||||||
2 | zf-B_box | 27.1 | 8.5e-09 | 62 | 107 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ C+ + lC +C + +H+ H++vp+ Vun009287 62 VWMCEVCEQAPAAVTCKADAAALCITCDSDIHSAnplarrHDRVPV 107 689*****************************66899999999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 5.4E-10 | 17 | 64 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.997 | 17 | 64 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.6E-5 | 19 | 61 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.13E-6 | 21 | 64 | No hit | No description |
PROSITE profile | PS50119 | 10.694 | 60 | 107 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.5E-6 | 61 | 107 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.48E-7 | 63 | 107 | No hit | No description |
SMART | SM00336 | 3.8E-8 | 65 | 107 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MGIERGGLKG FRSGWTVPPK PCDSCKLASA ALFCRPDSAF LCIACDSKIH CANKLASRHE 60 RVWMCEVCEQ APAAVTCKAD AAALCITCDS DIHSANPLAR RHDRVPVEPF FDSADSIVKA 120 SAAASFGFIV PSDDATAASD AFAPDDTDAA AWLIPNPNFG SKLMDAPDIK SKEIFYSEMD 180 PFLDFDYSNS FHNSAGNDSV VPVQTKPSLA PSLINNHHQS ESCFDIDFCR TKLSX |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027920708.1 | 1e-172 | zinc finger protein CONSTANS-LIKE 5 | ||||
Swissprot | Q9FHH8 | 3e-74 | COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5 | ||||
TrEMBL | A0A4D6L096 | 1e-171 | A0A4D6L096_VIGUN; Zinc finger protein CONSTANS | ||||
STRING | XP_007154800.1 | 1e-159 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57660.1 | 5e-74 | CONSTANS-like 5 |
Publications ? help Back to Top | |||
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