PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vun008946 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | B3 | ||||||||
Protein Properties | Length: 247aa MW: 27200 Da PI: 6.3445 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 67.6 | 1.8e-21 | 159 | 245 | 1 | 82 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k+lt sd++++g +++ +++a+e+ + k++ +++l+ +d++g++W++++i+r++++r++l +GW+ Fv++++L +gD ++F Vun008946 159 FCKTLTASDTSTHGGFSVLRRHADEClppldmS-KQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLXSGWSVFVSSKRLVAGDAFIF 245 99*****************************63.4445569**********************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.98E-34 | 155 | 246 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.5E-34 | 155 | 246 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.64E-20 | 157 | 245 | No hit | No description |
SMART | SM01019 | 4.4E-10 | 159 | 247 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.194 | 159 | 247 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-19 | 159 | 245 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MASSEVSIKG NSVNGKGENS SGGFNGGNDV RNAAGELQNA SSSPSARDAE TALYRELWHA 60 CAGPLVTVPR EGERVFYFPQ GHIEQVEAST NQVAEQHMPV YDLPPKILCR VINVMLKAEP 120 DTDEVFAQVT LLPEPNQDEN AVEKEGPPAP PPRFHVHSFC KTLTASDTST HGGFSVLRRH 180 ADECLPPLDM SKQPPTQELV AKDLHGNEWR FRHIFRGQPR RHLLXSGWSV FVSSKRLVAG 240 DAFIFLX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 1e-105 | 52 | 246 | 18 | 211 | Auxin response factor 1 |
4ldy_B | 1e-105 | 52 | 246 | 18 | 211 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027922293.1 | 1e-177 | auxin response factor 2B | ||||
Swissprot | Q94JM3 | 1e-136 | ARFB_ARATH; Auxin response factor 2 | ||||
TrEMBL | A0A4D6L8U2 | 1e-175 | A0A4D6L8U2_VIGUN; Auxin response factor | ||||
STRING | XP_007159966.1 | 1e-171 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 1e-134 | auxin response factor 2 |