PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vun008944 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | B3 | ||||||||
Protein Properties | Length: 247aa MW: 28055.3 Da PI: 9.3573 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.8 | 2.4e-19 | 113 | 204 | 4 | 99 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 vl ps+ + ++++lp fae++ +g++ ++l+ ++gr+W+v++ yr+++ l++GW eF +n+L egD++vF+l +++e l v+vfr Vun008944 113 VLRPSYLYRGCIMYLPSCFAEKNlNGVSG---FIKLQLSNGRQWSVRCLYRGGR--AKLSQGWFEFTVENNLGEGDVCVFELLRTKEVVLQVTVFRV 204 7889*******************876743...59999999********665555..66************************9999999***99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.1E-25 | 102 | 203 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.05E-25 | 103 | 204 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.38E-23 | 108 | 203 | No hit | No description |
PROSITE profile | PS50863 | 14.099 | 110 | 205 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.7E-19 | 110 | 205 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.9E-17 | 113 | 203 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
XSSYSSKSAN SLGSQSTRDI GVQFNAVEFK RSTDELKLRY SNEEALNKTA KKERKSESQG 60 EEPSGENEEE AEMRYRFYES ASARKRTVTA EERERAINAS KAFEPTNPFC RVVLRPSYLY 120 RGCIMYLPSC FAEKNLNGVS GFIKLQLSNG RQWSVRCLYR GGRAKLSQGW FEFTVENNLG 180 EGDVCVFELL RTKEVVLQVT VFRVTEDAGL LNSPPSVQQL SQNMSHTKLL NPHLQHRVSS 240 TVKLIRN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 5e-75 | 76 | 206 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 5e-75 | 76 | 206 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027913888.1 | 1e-180 | B3 domain-containing transcription factor VRN1-like isoform X3 | ||||
Swissprot | Q8L3W1 | 2e-76 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A4D6LLI7 | 1e-177 | A0A4D6LLI7_VIGUN; Uncharacterized protein | ||||
STRING | XP_007153153.1 | 1e-159 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 2e-76 | related to vernalization1 1 |
Publications ? help Back to Top | |||
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