PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun008764
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TALE
Protein Properties Length: 255aa    MW: 28969.6 Da    PI: 6.5133
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-167a-Vigna_unguiculata-31703PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.73.9e-081922252154
                HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                k +yp++e++++L +++gL+ +q+ +WF N+R +
  Vun008764 192 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 225
                469*****************************87 PP
2ELK29.71.5e-10146167122
        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                ELKh+L+++Y+++++++++E++
  Vun008764 146 ELKHELKQGYKEKIVDIREEIL 167
                9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037909.9E-6125IPR005540KNOX1
SMARTSM012564.9E-273489IPR005541KNOX2
PfamPF037912.4E-203888IPR005541KNOX2
PROSITE profilePS512139.969146166IPR005539ELK domain
SMARTSM011886.1E-4146167IPR005539ELK domain
PfamPF037895.2E-7146167IPR005539ELK domain
PROSITE profilePS5007111.726166229IPR001356Homeobox domain
SuperFamilySSF466892.14E-16168232IPR009057Homeodomain-like
SMARTSM003894.7E-11168233IPR001356Homeobox domain
CDDcd000864.27E-12169230No hitNo description
Gene3DG3DSA:1.10.10.601.9E-25173230IPR009057Homeodomain-like
PfamPF059205.8E-18186225IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
HVACLRIATP VDQLPRIDAQ LAQSQNVLAK YSAFGQAIVD DKELDQFLSH YVLLLCSFKE  60
QLQQHVRVHA MEAVMACWEI EQSLQSLTGV SPGEGTGATM SDDEDEQVDS DANLFDGGLD  120
GPDSMGFGPL IPTENERSLM ERVRHELKHE LKQGYKEKIV DIREEILRKR RAGKLPGDTT  180
SVLKAWWQSH SKWPYPTEED KARLVQETGL QLKQINNWFI NQRKRNWHSN PSTSTVLKSK  240
RKRSNAGDNS ADHHM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-12169233872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222242RKRNWHSNPSTSTVLKSKRKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027903509.10.0homeobox protein knotted-1-like 3 isoform X1
SwissprotP480001e-166KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A1S3U6970.0A0A1S3U697_VIGRR; homeobox protein knotted-1-like 3 isoform X1
STRINGXP_007136985.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-168KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]