PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vun008732 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 256aa MW: 29254.1 Da PI: 8.3759 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 96.6 | 2.2e-30 | 134 | 219 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea Vun008732 134 RWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 219 8*************************************999*****************************98..55667*******85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.131 | 127 | 192 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 3.6E-21 | 134 | 220 | No hit | No description |
CDD | cd12203 | 2.13E-23 | 134 | 199 | No hit | No description |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 256 aa Download sequence Send to blast |
MEDHHHHHHH QHHEQHHHHQ QQYAITDLRQ LMNGPRSTHF PTMPPQPKPD LFPAGHPNLA 60 PSQHFEMMMF GRQVADIMPR CLHDFASTDS ATNNNNTSIA AATPTTTTSA STPPLSCLEG 120 ETAGCIGGDA STGRWPRQET LTLLEIRSRL DSKFKEANQK GPLWDEVSRI MSEEHGYQRS 180 GKKCREKFEN LYKYYKKTKE GKAGRQDGKH YRFFRQLEAL YGENSNQTSV PETNFGSDSL 240 RFHSNNHNPS QTKSKX |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027931315.1 | 0.0 | trihelix transcription factor PTL | ||||
Swissprot | Q9LZS0 | 1e-62 | PTL_ARATH; Trihelix transcription factor PTL | ||||
TrEMBL | A0A4D6MDA1 | 0.0 | A0A4D6MDA1_VIGUN; Uncharacterized protein | ||||
STRING | XP_007162858.1 | 1e-143 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G03680.1 | 3e-60 | Trihelix family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|