PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun008265
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TALE
Protein Properties Length: 277aa    MW: 31654.8 Da    PI: 6.9309
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-167a-Vigna_unguiculata-25044PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.78.1e-082262592154
                HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                k +yp+++++++L +++gL+ +q+ +WF N+R +
  Vun008265 226 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 259
                469*****************************87 PP
2ELK25.62.8e-09180201122
        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                ELK +L++++++++ ++++E++
  Vun008265 180 ELKIELKQGFKSRIEDVREEIL 201
                9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012557.1E-191458IPR005540KNOX1
PfamPF037903.2E-171657IPR005540KNOX1
SMARTSM012565.9E-2369124IPR005541KNOX2
PfamPF037911.0E-1673123IPR005541KNOX2
PROSITE profilePS512139.132180200IPR005539ELK domain
PROSITE profilePS5007111.71200263IPR001356Homeobox domain
SuperFamilySSF466892.82E-16202267IPR009057Homeodomain-like
SMARTSM003895.3E-11202267IPR001356Homeobox domain
CDDcd000864.85E-12203264No hitNo description
Gene3DG3DSA:1.10.10.603.6E-25207265IPR009057Homeodomain-like
PfamPF059209.7E-18220259IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MGGLSGEVSG DHHRQLKAEI ATHPLYEQLL AAHVSCLRVA TPIDQLPLID AQLSHSHHLI  60
RSYVSHHTHS LSPNDRQELD NFLAQYLIVL CTFKEQLQQH VRVHAVEAVM ACRDIENTLQ  120
ALTGVSLGEG TGATMSDDED ELQMDFSLDQ SSAEGHDMMG FGPLLPTESE RSLMERVRQE  180
LKIELKQGFK SRIEDVREEI LRKRRAGKLP GDTTSVLKNW WQQHAKWPYP TEDDKAKLVE  240
ETGLQLKQIN NWFINQRKRN WHSNSQSVTS LKSKRKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-12203259864Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256276RKRNWHSNSQSVTSLKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtPossible developmental regulator.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By wounding; up to 7-fold increase.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027914151.10.0homeobox protein HD1-like
SwissprotP466061e-167HD1_BRANA; Homeobox protein HD1
TrEMBLA0A0L9UPV40.0A0A0L9UPV4_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T5I90.0A0A0S3T5I9_PHAAN; Uncharacterized protein
STRINGXP_007158449.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-167KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Boivin R,Hamel F,Beauseigle D,Bellemare G
    Stage-specific transcription of the homebox gene Bnhd1 in young tissues and flowers of Brassica napus.
    Biochim. Biophys. Acta, 1994. 1219(1): p. 201-4
    [PMID:7916213]