PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun008002

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

MYB

Protein Properties

Length: 294aa MW: 33722.4 Da PI: 8.5697

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-167a-Vigna_unguiculata-1473	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.2	5e-15	2	48	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g+WT+e d +lv +++++G+g+W++++ g+ R+ k+c++rw +yl Vun008002 2 GPWTPEGDIILVSYIQEHGPGNWRSVPTNTGLSRCSKSCRLRWTNYL 48 89*******************************************97 PP
2	Myb_DNA-binding	36	1.6e-11	54	151	1	48
TSSS-HHHHHHHHHHHHHTTTT...................................................-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...................................................tWktIartmgkgRtlkqcksr 43 rg++T+ E+ ++++ ++lG++ +W++Ia++++ Rt++++k++ Vun008002 54 RGNFTPHEEGMIIHLQALLGNKnsrsnimifssqpqkenqyiqifflfvydfsiyvyvyaydmpesvklliveRWAAIASYLP-QRTDNDIKNY 146 89*******************************************************************************.****** PP HHHHT CS Myb_DNA-binding 44 wqkyl 48 w+++l Vun008002 147 WNTHL 151 996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	23.294	1	52	IPR017930	Myb domain
SMART	SM00717	3.3E-8	1	50	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.28E-20	2	52	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.4E-21	2	55	IPR009057	Homeodomain-like
Pfam	PF00249	1.2E-13	2	48	IPR001005	SANT/Myb domain
CDD	cd00167	4.95E-9	3	48	No hit	No description
PROSITE profile	PS50090	7.364	49	151	IPR017877	Myb-like domain
SMART	SM00717	5.6E-7	53	153	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.8E-20	56	74	IPR009057	Homeodomain-like
CDD	cd00167	1.88E-6	120	151	No hit	No description
SuperFamily	SSF46689	1.28E-20	123	152	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.8E-20	127	156	IPR009057	Homeodomain-like
Pfam	PF00249	5.7E-7	127	151	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
XGPWTPEGDI ILVSYIQEHG PGNWRSVPTN TGLSRCSKSC RLRWTNYLRP GIKRGNFTPH 60 EEGMIIHLQA LLGNKNSRSN IMIFSSQPQK ENQYIQIFFL FVYDFSIYVY VYAYDMPESV 120 KLLIVERWAA IASYLPQRTD NDIKNYWNTH LKKKLKKFQA AMDPHSASDS ATSGQYLPKS 180 FNDRRSLDMS SNNNNHVSSV RLSQCQSSTY ASSTENISRL LEGWMRSSPK PLKRSHDEEL 240 QSIDDDNNNN NNNFESTNKL VKCASLPALN LHHQHKRNKD EQEGGVDMAS AHEE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269\|PubMed:22018045}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269\|PubMed:22018045}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027920320.1	1e-146	myb-related protein 306
Swissprot	B3VTV7	6e-86	MYB60_VITVI; Transcription factor MYB60
TrEMBL	A0A4D6M737	1e-147	A0A4D6M737_VIGUN; Myb proto-oncogene protein
STRING	XP_007161907.1	1e-135	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08810.1	9e-74	myb domain protein 60

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507]