PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun007986

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C3H

Protein Properties

Length: 296aa MW: 32828.7 Da PI: 8.6427

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-167a-Vigna_unguiculata-21491	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.6	2.8e-10	83	108	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C yG++C+++H+ Vun007986 83 PGEPDCLYYLRTGMCGYGSNCRYHHP 108 5789*********************8 PP
2	zf-CCCH	38.5	2e-12	126	151	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +f++tGtCkyG++Ck++H++ Vun007986 126 GQPDCEYFLKTGTCKYGSTCKYHHPK 151 5799********************96 PP
3	zf-CCCH	38.7	1.6e-12	174	196	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++++rtG Ck+G CkF+H++ Vun007986 174 SCPYYMRTGSCKFGVACKFHHPQ 196 6********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.986	82	110	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.6E-5	82	109	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.2E-7	84	108	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.28E-6	87	109	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.6E-4	88	109	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	7.4E-7	124	151	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.788	124	152	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.3E-10	126	151	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.57E-6	128	153	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.0E-5	130	151	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.31E-6	168	197	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.638	169	197	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.1E-4	171	196	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.0E-10	173	196	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.9E-5	174	197	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
XRVLCADFFL KAQKGSSGFD RTTKKSLLLS FQRYQMPENR QVLRNADSTP SGDNIEEAIR 60 RLKINDNWDR DAAAQSTQYP DRPGEPDCLY YLRTGMCGYG SNCRYHHPAH ISIGSHYGEE 120 LPQRTGQPDC EYFLKTGTCK YGSTCKYHHP KDRRGAAPVS FNTLGLPMRQ EEKSCPYYMR 180 TGSCKFGVAC KFHHPQHASI GAYPLAGSPT STIIPTSGLP YAGGFPAWSA VPRVSYLSGQ 240 GVQSYVPPFL SSSQSIIPVQ SWNNYMGSMN PTMPTGYLGS NLVYDFMNLG ESLFGG

Functional Description ? help Back to Top
Source	Description
UniProt	Possesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269\|PubMed:18582464}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014505309.1	0.0	zinc finger CCCH domain-containing protein 3 isoform X2
Refseq	XP_017430909.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X2
Swissprot	Q94AD9	3e-76	C3H3_ARATH; Zinc finger CCCH domain-containing protein 3
TrEMBL	A0A4D6MIZ3	0.0	A0A4D6MIZ3_VIGUN; Serine/threonine-protein kinase/endoribonuclease IRE1
STRING	XP_007141660.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	1e-78	C3H family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]