PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun007955

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Whirly

Protein Properties

Length: 299aa MW: 33607.9 Da PI: 10.3508

Description

Whirly family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-167a-Vigna_unguiculata-11295	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Whirly	202.3	5.9e-63	124	261	1	138
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlp 100 s+yk+kaal++ ++ p+f+ ldsg+ k++++G +ll++a+a+++r+ydW++kq+f+ls+ e++++++l+++esceffhdp++++s+eGkvrk lk+ePlp Vun007955 124 SIYKGKAALTLTPRPPEFVPLDSGAYKISKEGYVLLQFAPAVGTRQYDWNRKQVFSLSVGEMGSVISLGTRESCEFFHDPFKGKSDEGKVRKILKLEPLP 223 7************************************************************************************************* PP Whirly 101 dGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsll 138 dGsG+f+nlsv+n+lv+++e++++P++kae avl s + Vun007955 224 DGSGHFFNLSVQNKLVNVDENIYIPITKAELAVLCSTF 261 ********************************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.30.31.10	2.8E-76	113	284	IPR009044	ssDNA-binding transcriptional regulator
SuperFamily	SSF54447	8.63E-77	117	299	IPR009044	ssDNA-binding transcriptional regulator
Pfam	PF08536	5.5E-60	125	258	IPR013742	Plant transcription factor

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
XKDNLKANTK DRERHIEAKG SGRSRKDRVR VRVRRRKMSN LQFQLHSQPS PFSSLSSLSS 60 SSLKLFANHS FSPNSLPFNP PKPFSLRCRH SDLFDQNTLA SSQRPTRPTA SVGALPPRVY 120 VGYSIYKGKA ALTLTPRPPE FVPLDSGAYK ISKEGYVLLQ FAPAVGTRQY DWNRKQVFSL 180 SVGEMGSVIS LGTRESCEFF HDPFKGKSDE GKVRKILKLE PLPDGSGHFF NLSVQNKLVN 240 VDENIYIPIT KAELAVLCST FNFIMPYLLG WHTFANSIKP EDTSGVNNAN PRYGGDYEW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1l3a_A	1e-109	113	299	32	218	p24: plant transcriptional regulator PBF-2
1l3a_B	1e-109	113	299	32	218	p24: plant transcriptional regulator PBF-2
1l3a_C	1e-109	113	299	32	218	p24: plant transcriptional regulator PBF-2
1l3a_D	1e-109	113	299	32	218	p24: plant transcriptional regulator PBF-2
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Functional Description ? help Back to Top
Source	Description
UniProt	Single-stranded DNA-binding protein that functions in both chloroplasts and nucleus. In chloroplasts, maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. In nucleus, modulates telomere length homeostasis by inhibiting the action of the telomerase at the extreme termini of chromosomes. Is recruited to a distal element upstream of the kinesin KP1 to mediate the transcriptional repression of KP1. Is required for full salicylic acid-dependent plant disease resistance responses. Can bind double-stranded DNA in vivo. {ECO:0000269\|PubMed:14960277, ECO:0000269\|PubMed:17217467, ECO:0000269\|PubMed:19666500, ECO:0000269\|PubMed:19669906, ECO:0000269\|PubMed:20551348, ECO:0000269\|PubMed:21911368}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid (SA) and infection by H.parasitica. {ECO:0000269\|PubMed:14960277, ECO:0000269\|PubMed:19669906}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027917372.1	0.0	single-stranded DNA-binding protein WHY1, chloroplastic-like
Swissprot	Q9M9S3	1e-116	WHY1_ARATH; Single-stranded DNA-binding protein WHY1, chloroplastic
TrEMBL	A0A4D6L2G9	0.0	A0A4D6L2G9_VIGUN; Plant transcription factor
STRING	XP_007153835.1	1e-176	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14410.1	1e-116	ssDNA-binding transcriptional regulator

Publications ? help Back to Top
Lepage É,Zampini É,Brisson N Plastid genome instability leads to reactive oxygen species production and plastid-to-nucleus retrograde signaling in Arabidopsis. Plant Physiol., 2013. 163(2): p. 867-81 [PMID:23969600] Carella P,Wilson DC,Cameron RK Some things get better with age: differences in salicylic acid accumulation and defense signaling in young and mature Arabidopsis. Front Plant Sci, 2014. 5: p. 775 [PMID:25620972] Zampini É,Lepage É,Tremblay-Belzile S,Truche S,Brisson N Organelle DNA rearrangement mapping reveals U-turn-like inversions as a major source of genomic instability in Arabidopsis and humans. Genome Res., 2015. 25(5): p. 645-54 [PMID:25800675] Ren Y,Li Y,Jiang Y,Wu B,Miao Y Phosphorylation of WHIRLY1 by CIPK14 Shifts Its Localization and Dual Functions in Arabidopsis. Mol Plant, 2017. 10(5): p. 749-763 [PMID:28412544] Karpinska B,Alomrani SO,Foyer CH Inhibitor-induced oxidation of the nucleus and cytosol in Arabidopsis thaliana: implications for organelle to nucleus retrograde signalling. Philos. Trans. R. Soc. Lond., B, Biol. Sci., 2018. [PMID:28808105] Huang D,Lin W,Deng B,Ren Y,Miao Y Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis. Int J Mol Sci, 2018. [PMID:29112140] Guan Z,Wang W,Yu X,Lin W,Miao Y Comparative Proteomic Analysis of Coregulation of CIPK14 and WHIRLY1/3 Mediated Pale Yellowing of Leaves in Arabidopsis. Int J Mol Sci, 2018. [PMID:30065159]