PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun007833
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 311aa    MW: 34008.9 Da    PI: 8.0869
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-167a-Vigna_unguiculata-26814PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.73.2e-09855447
                     S-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqky 47
                     W+ eE++ + +a++++  +     +W++Ia+ ++ +++ +++k ++q +
        Vun007833  8 WSYEEEKAFENAIAMHWIEeaskeQWEKIASAVP-TKSMEEVKQHYQVL 55
                     *****************99***************.************86 PP
2Myb_DNA-binding38.82.1e-12135179347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
        Vun007833 135 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 179
                      7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.097160IPR017884SANT domain
SMARTSM007171.6E-5458IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-5655IPR009057Homeodomain-like
SuperFamilySSF466892.73E-9862IPR009057Homeodomain-like
CDDcd001674.59E-8856No hitNo description
PfamPF002494.1E-7855IPR001005SANT/Myb domain
PROSITE profilePS5129416.873128184IPR017930Myb domain
SuperFamilySSF466897.9E-17130185IPR009057Homeodomain-like
TIGRFAMsTIGR015574.4E-17132182IPR006447Myb domain, plants
SMARTSM007172.3E-10132182IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-11133178IPR009057Homeodomain-like
CDDcd001671.11E-9135180No hitNo description
PfamPF002497.8E-11135179IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MSSSGTLWSY EEEKAFENAI AMHWIEEASK EQWEKIASAV PTKSMEEVKQ HYQVLVEDVS  60
AIEAGHIPFP NYASEETTSS NKDFHASSKA TNSDKRSNCN FGTGFSGLGH DSTTHSSGKG  120
ALSRSSEQER RKGIPWTEEE HRLFLLGLDK FGKGDWRSIS RNFVISRTPT QVASHAQKYF  180
IRLNSMNRDR RRSSIHDITS VNNGDVASNQ APITGQHSST VSSSTMGVGQ SLKHRVQGHI  240
PPGLGMYGTP VGHPVAAPPG HMASAVGTPV MLPPGPHPHA HAHAHPHPHP HPHPPYVLPL  300
AYPMAPPTMH Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-15481779RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027917818.10.0transcription factor SRM1-like
SwissprotQ9FNN62e-88SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A4D6KT970.0A0A4D6KT97_VIGUN; Uncharacterized protein
STRINGXP_007155139.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.11e-79MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]