PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vun007533 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NAC | ||||||||
Protein Properties | Length: 343aa MW: 38726.9 Da PI: 4.813 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 86.7 | 4.4e-27 | 14 | 155 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tksgyW 83 p G++F+P+d el+ e+L+ k+ + + +e+i++++ i+ ++P++L+ +k++ + +fF+k+ ++yatg+rk+r+ ++ W Vun007533 14 PLGVKFDPSDVELL-EHLAGKCGVGNtqpdmfI--NEFISTLEgdqgICCTHPENLQ-GAKKDGSYFHFFHKTINAYATGQRKRRKihhqqgltEEHWHW 109 89************.999999876664555432..333444323344*********8.556777889******************85666666333556* PP NAM 84 katgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++tg++k++++ +g +g kk++v++ +++ +k+ k++Wvmh+y+l Vun007533 110 HKTGRTKAIIQ-NGMCKGFKKIMVLHvrSKSGSKPFKSNWVMHQYHL 155 **********9.999***********6544556666*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-32 | 3 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 27.969 | 13 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.1E-12 | 14 | 155 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
IDNSDVSSEW PGFPLGVKFD PSDVELLEHL AGKCGVGNTQ PDMFINEFIS TLEGDQGICC 60 THPENLQGAK KDGSYFHFFH KTINAYATGQ RKRRKIHHQQ GLTEEHWHWH KTGRTKAIIQ 120 NGMCKGFKKI MVLHVRSKSG SKPFKSNWVM HQYHLGTEEE EKEGEYVVSK IFYQQQKQTE 180 NNEDNPMVEV PDNIVSRTSP RTPKPNPPHP PPRVGNSVDC DDCIYETIRL PSGQTILGES 240 HAPISDVQDL DNSACLPGES QAEEHTEYDG LDDILLCKEI LDSSALLNDS GLDSSNLYDL 300 AFYDNQIARN DNESCGISVL DTLELDTPDF DHSNLNFYSQ YRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027922212.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1-like isoform X4 | ||||
Swissprot | Q6NQK2 | 4e-66 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A4D6M556 | 0.0 | A0A4D6M556_VIGUN; Uncharacterized protein | ||||
STRING | XP_007141004.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01600.1 | 4e-63 | NAC domain containing protein 44 |