PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun007526
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 343aa    MW: 37745 Da    PI: 5.6716
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-167a-Vigna_unguiculata-20114PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS178.83.9e-551583361179
       GRAS   1 lvelLlecAeavssgdlelaqalLar.lselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                l+e+L +cA+avs+gd e a  ++++ l +++s  gdp+qRl ay++e+L+arl +s+s +ykal++++ +    ++ +++++++++++P++kf+++ aN
  Vun007526 158 LKEVLNRCAQAVSDGDIETAVGFMNNvLPKMVSVGGDPIQRLGAYMLEGLRARLESSGSLIYKALKCEQPA---GKDLMSYMHILYQICPYFKFAYVSAN 254
                5789********************8726788***************************************9...99************************ PP

       GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefn 179
                  I ea+ +e+r+HiiDf+i qG+QW+ L++aLasRp+gpps+R+Tgv+++es+  +   l  +g+rL+++A++ gvpfef 
  Vun007526 255 AVIGEAMVNESRIHIIDFQIAQGTQWMLLIHALASRPGGPPSFRVTGVDDSESFhaRGGGLDIVGKRLSDYAKSRGVPFEFP 336
                **************************************************9999889999*********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098534.815132343IPR005202Transcription factor GRAS
PfamPF035141.4E-52158336IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
XDPYTRYQVL QSNSCHEIHD SNSQGTTISF EPCKEQYFTL ESSPPLNDLI GCDSPSYASA  60
SSSSNRSPFS PHVSHSYHSD QHQSSDNNYG SPTSAHSSAD DSYELKHKLR ELEISLLGPD  120
SGIVDSCQCC YEGGHHGASS MAKYNWDQVV EMIPKLDLKE VLNRCAQAVS DGDIETAVGF  180
MNNVLPKMVS VGGDPIQRLG AYMLEGLRAR LESSGSLIYK ALKCEQPAGK DLMSYMHILY  240
QICPYFKFAY VSANAVIGEA MVNESRIHII DFQIAQGTQW MLLIHALASR PGGPPSFRVT  300
GVDDSESFHA RGGGLDIVGK RLSDYAKSRG VPFEFPQCCN VWM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-2816433524191Protein SCARECROW
5b3h_D1e-2816433524191Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027932080.10.0scarecrow-like protein 13
SwissprotQ9M0M51e-110SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A4D6KTW20.0A0A4D6KTW2_VIGUN; DELLA protein
STRINGXP_007147638.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.19e-96SCARECROW-like 13