PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun007295

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

TCP

Protein Properties

Length: 380aa MW: 40749.9 Da PI: 6.7956

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-167a-Vigna_unguiculata-29754	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	127.4	1.4e-39	77	151	2	79
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesss 79 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ s + Vun007295 77 PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFT---SLN 151 789*************************************************************99988776...222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.1E-34	81	154	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.923	83	137	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MDGGDDFHHH HHHHQHQHRQ NFPFQLLEKK EDQDPSSCST SSPYPSLAIS AEPSTSNSTR 60 STTLLPTPSE ASPKKPPPKR TSTKDRHTKV DGRGRRIRMP ALCAARVFQL TRELGHKSDG 120 ETIEWLLQQA EPAVIAATGT GTIPANFTSL NNLTGAPAPP CPSPPSCDPT TSIPTSLSNP 180 GEACSLTTPI PPPHSSIFNP TTPSPLPYSQ PKHELRDSSS LDLSSENNEE GLGRKRRPLE 240 QDLSSTMQHH VGSYSMQSSS SGTIPASHAQ IPANIWMVAN SNSQGVSGEA PLWTFPGVSN 300 SALYRGNMSS GLHFMNFPTP MALLPGQQLG SSGIGGNINE GHLSMLSGLN PYRTVIGVSE 360 SQASESQSHH GGSEDRHDDN

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MDGGDDFHHH HHHHQHQHRQ NFPFQLLEKK EDQDPSSCST SSPYPSLAIS AEPSTSNSTR  60
STTLLPTPSE ASPKKPPPKR TSTKDRHTKV DGRGRRIRMP ALCAARVFQL TRELGHKSDG  120
ETIEWLLQQA EPAVIAATGT GTIPANFTSL NNLTGAPAPP CPSPPSCDPT TSIPTSLSNP  180
GEACSLTTPI PPPHSSIFNP TTPSPLPYSQ PKHELRDSSS LDLSSENNEE GLGRKRRPLE  240
QDLSSTMQHH VGSYSMQSSS SGTIPASHAQ IPANIWMVAN SNSQGVSGEA PLWTFPGVSN  300
SALYRGNMSS GLHFMNFPTP MALLPGQQLG SSGIGGNINE GHLSMLSGLN PYRTVIGVSE  360
SQASESQSHH GGSEDRHDDN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269\|PubMed:17953649, ECO:0000269\|PubMed:21668538, ECO:0000269\|PubMed:22155632, ECO:0000269\|PubMed:22267487, ECO:0000269\|PubMed:24689742, ECO:0000269\|PubMed:25655823, ECO:0000269\|PubMed:25757472, ECO:0000269\|PubMed:28132837}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269\|PubMed:17953649}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007138192.1	0.0	hypothetical protein PHAVU_009G188100g
Swissprot	Q93Z00	3e-60	TCP14_ARATH; Transcription factor TCP14
TrEMBL	V7B171	0.0	V7B171_PHAVU; Uncharacterized protein
STRING	XP_007138192.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	3e-43	TCP family protein

Publications ? help Back to Top
Steiner E, et al. The Putative O-Linked N-Acetylglucosamine Transferase SPINDLY Inhibits Class I TCP Proteolysis to Promote Sensitivity to Cytokinin. Plant Physiol., 2016. 171(2): p. 1485-94 [PMID:27208284] Yang L, et al. Pseudomonas syringae Type III Effector HopBB1 Promotes Host Transcriptional Repressor Degradation to Regulate Phytohormone Responses and Virulence. Cell Host Microbe, 2017. 21(2): p. 156-168 [PMID:28132837] Zhang N, et al. MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis. Plant J., 2018. 93(1): p. 66-78 [PMID:29086441] Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]