PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Vun005802 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NAC | ||||||||||||
Protein Properties | Length: 172aa MW: 20045.6 Da PI: 9.3529 | ||||||||||||
Description | NAC family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 65.1 | 2.1e-20 | 3 | 60 | 73 | 128 |
NAM 73 rknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 r+nr+t+sg+Wkatg dk++++ +e +glkk+Lv+y+g+a kg+ktdW+mhe+rl Vun005802 3 RPNRVTRSGFWKATGIDKSIYCVkePHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 60 89*******************97445566***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 27.861 | 1 | 85 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.14E-23 | 2 | 84 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.1E-9 | 4 | 60 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
XVRPNRVTRS GFWKATGIDK SIYCVKEPHE CIGLKKSLVY YRGSAGKGTK TDWMMHEFRL 60 PPNIANVTNN LHEAEVWTLC RIFKRIPSFK KYTPNLKDTK SNTVNSNTST IDSDNCKPYL 120 ICRDTEMMQQ LKPVFGQVDE KKHLYLQPPS STPYPTFWNH NVEDYTFANE NW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-19 | 3 | 91 | 91 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-19 | 3 | 91 | 91 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-19 | 3 | 91 | 91 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-19 | 3 | 91 | 91 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-19 | 3 | 91 | 91 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-19 | 3 | 91 | 91 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-19 | 3 | 91 | 91 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-19 | 3 | 91 | 91 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027931731.1 | 1e-126 | transcription factor JUNGBRUNNEN 1-like | ||||
Swissprot | Q9SK55 | 7e-36 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A4D6KSE9 | 1e-124 | A0A4D6KSE9_VIGUN; Uncharacterized protein | ||||
STRING | XP_007146230.1 | 1e-108 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12910.1 | 2e-37 | NAC family protein |