PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Vun005781 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NF-YC | ||||||||||||
Protein Properties | Length: 173aa MW: 19651.3 Da PI: 10.2581 | ||||||||||||
Description | NF-YC family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 40.1 | 8.2e-13 | 67 | 152 | 14 | 99 |
NF-YC 14 tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 d k + +P+ ri+ ++k ++ ++s ea + ka e f+ ++t ++ + + +++ l +a++v++ +dfl d vp++ Vun005781 67 DDEKANVFPMNRIRTMIKGEDPDMRVSQEAVLAINKAVEKFLEQFTQDAYACCVQDRKKCLGYKHVANVVSKKRRYDFLSDFVPEK 152 3567889***********87666789*********************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 5.12E-17 | 48 | 145 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.3E-13 | 74 | 136 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 2.0E-23 | 74 | 151 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MASSNTPKPH KSPKAKKGEI STTQNKTKEE TRDITKEENQ KKKNKKPKLS NGNSKHPHEK 60 GAERSGDDEK ANVFPMNRIR TMIKGEDPDM RVSQEAVLAI NKAVEKFLEQ FTQDAYACCV 120 QDRKKCLGYK HVANVVSKKR RYDFLSDFVP EKVKAEDALR ERDASGNGVF QKI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 122 | 140 | RKKCLGYKHVANVVSKKRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027909249.1 | 1e-113 | DNA polymerase epsilon subunit 4 | ||||
TrEMBL | A0A0S3SCL1 | 1e-105 | A0A0S3SCL1_PHAAN; Uncharacterized protein | ||||
STRING | XP_007132235.1 | 3e-96 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 2e-28 | nuclear factor Y, subunit C10 |