PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Vun005648 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | GRAS | ||||||||||||
Protein Properties | Length: 178aa MW: 20598.3 Da PI: 6.2721 | ||||||||||||
Description | GRAS family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 214.7 | 4.9e-66 | 2 | 178 | 198 | 374 |
GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297 pgEal+Vn+++qlh++ de+vs+ +erd++L++vk l+Pk+v++veq++++n+++Fl+rf+ea +yysa+fd+l+a+lpres++r++vEr++l+++ivn+ Vun005648 2 PGEALVVNFAFQLHHMRDETVSTVNERDQLLRMVKCLNPKLVTIVEQDMNTNTSPFLQRFVEAYNYYSAVFDTLDATLPRESQDRMNVERQCLAKDIVNI 101 79************************************************************************************************** PP GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 vaceg++r+er e ++kWr+rl++aGF+p p+s+++ + ++ l+ k + d ++++ee g+l +gW+d++L+++SaW+ Vun005648 102 VACEGEDRIERYEVAGKWRARLTMAGFTPSPISTNVREAISKLIIKQYCDRFKIKEEMGALHFGWEDKNLIVTSAWK 178 ********************************************9999888*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 31.323 | 1 | 158 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.7E-63 | 2 | 178 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
XPGEALVVNF AFQLHHMRDE TVSTVNERDQ LLRMVKCLNP KLVTIVEQDM NTNTSPFLQR 60 FVEAYNYYSA VFDTLDATLP RESQDRMNVE RQCLAKDIVN IVACEGEDRI ERYEVAGKWR 120 ARLTMAGFTP SPISTNVREA ISKLIIKQYC DRFKIKEEMG ALHFGWEDKN LIVTSAWK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-27 | 2 | 178 | 199 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027939579.1 | 1e-128 | scarecrow-like protein 1 | ||||
Refseq | XP_027939581.1 | 1e-128 | scarecrow-like protein 1 | ||||
Swissprot | Q9SDQ3 | 4e-97 | SCL1_ARATH; Scarecrow-like protein 1 | ||||
TrEMBL | A0A4D6MHP9 | 1e-126 | A0A4D6MHP9_VIGUN; DELLA protein | ||||
STRING | XP_007161385.1 | 1e-126 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21450.1 | 2e-99 | SCARECROW-like 1 |
Publications ? help Back to Top | |||
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