PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun005540
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family DBB
Protein Properties Length: 182aa    MW: 19698.4 Da    PI: 6.6025
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45825244PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-15159PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.26.2e-07447542
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                C+ +e  e++  C  ++  lC +C ++ H        H++vpl
  Vun005540  4 QCNVCEAAEAKVLCCADEAALCWECDEKVHAAnklankHQRVPL 47
               7******99*********************66889999999986 PP
2zf-B_box27.56.4e-095495338
   zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
               ++kC+ ++e    +fC +++ l+C++C l++H        H+
  Vun005540 54 MPKCDICQEALGYFFCLEDRALFCRKCDLAIHTAnayvsgHQ 95
               799*******9*********************5455666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.694147IPR000315B-box-type zinc finger
CDDcd000211.29E-7347No hitNo description
SMARTSM003364.2E-10447IPR000315B-box-type zinc finger
PfamPF006431.7E-5447IPR000315B-box-type zinc finger
PROSITE profilePS501198.9875299IPR000315B-box-type zinc finger
SMARTSM003362.8E-155299IPR000315B-box-type zinc finger
PfamPF006439.4E-75495IPR000315B-box-type zinc finger
CDDcd000214.44E-85599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MKIQCNVCEA AEAKVLCCAD EAALCWECDE KVHAANKLAN KHQRVPLSTS SSHMPKCDIC  60
QEALGYFFCL EDRALFCRKC DLAIHTANAY VSGHQRFLLT GVRVGLEATE PGASSSSLKS  120
DSGEKISDTK SSSISRKVST VPQNSDYNEL LPIESGGVEG FPPAKSLLVV VLQLEISHSG  180
HR
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027925873.11e-118B-box zinc finger protein 22
SwissprotQ9SYM27e-65BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A4D6N8X21e-117A0A4D6N8X2_VIGUN; Zinc finger protein CONSTANS
STRINGXP_007149516.11e-112(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.13e-65light-regulated zinc finger protein 1