PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun005245
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 193aa    MW: 21503.7 Da    PI: 9.7327
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45953276PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-11139PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.15e-1674163193
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f+k+++  +v+ s  l +p +f ++h   ++ +++++l++++g+ W+v+   + k+++ +++ +GW  Fv++n+++ gD+++F+l+ + e    
  Vun005245  74 FVKIMKMFNVSGSYTLKIPYQFSAAHL--PTYKTEVILRNSRGECWTVNSVPDAKGRTvHTFCGGWMAFVRDNDINFGDTCIFELVTQCEM--Q 163
                788888889999999********9994..334569***************77666666799***********************9864333..4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-2265167IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-2367168IPR015300DNA-binding pseudobarrel domain
CDDcd100175.03E-2072166No hitNo description
PROSITE profilePS5086312.71774170IPR003340B3 DNA binding domain
PfamPF023621.9E-1374161IPR003340B3 DNA binding domain
SMARTSM010195.2E-1074170IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
VLSIDLKKSG RASNTSKKMG LCSQSKAAHK KLANPRRHRV EDELSSQAKS GLRMLFALDE  60
QRVAQAFSSP FPSFVKIMKM FNVSGSYTLK IPYQFSAAHL PTYKTEVILR NSRGECWTVN  120
SVPDAKGRTV HTFCGGWMAF VRDNDINFGD TCIFELVTQC EMQVYISGVG KEGPEHQNGH  180
LKPDRLSILP SSC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027940564.11e-139B3 domain-containing protein Os11g0197600-like
TrEMBLA0A1S3U9I41e-132A0A1S3U9I4_VIGRR; B3 domain-containing protein Os11g0197600
STRINGXP_007160811.11e-127(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.13e-17B3 family protein