PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Vun005093 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | DBB | ||||||||||||
Protein Properties | Length: 199aa MW: 21770.7 Da PI: 7.186 | ||||||||||||
Description | DBB family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.5 | 1.2e-07 | 16 | 47 | 3 | 34 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeH 34 ++ C+ +e+ ++ fC ++ lC+ C ++ H Vun005093 16 AKLCDACESAAAIVFCAADEAALCRACDEKVH 47 578**************************998 PP | |||||||
2 | zf-B_box | 30.7 | 6.5e-10 | 66 | 105 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 + ++C+ +e+ ++ ++Ce++++ lC +C + H g H Vun005093 66 DVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGgkrtH 105 5799**************************9995544455 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.253 | 14 | 61 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.2E-9 | 14 | 61 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 6.6E-6 | 16 | 55 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.08E-6 | 18 | 59 | No hit | No description |
SuperFamily | SSF57845 | 1.05E-5 | 62 | 100 | No hit | No description |
PROSITE profile | PS50119 | 9.158 | 65 | 110 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.1E-11 | 65 | 110 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.0E-7 | 66 | 99 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.45E-7 | 68 | 98 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
GYPHGFAMKV GESSYAKLCD ACESAAAIVF CAADEAALCR ACDEKVHMCN KLASRHVRVG 60 LASPSDVPRC DICENAPAFF YCETDGSSLC LQCDMIVHVG GKRTHGRYLL FRQRVEFPGD 120 KSSHAENPGS QALEPGESKR GQNPLPKLRM GEKQQNHVMP LLPTPGSDAD GHTKMETKMI 180 DLNMKPNNRL HEQASNNQP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027907919.1 | 1e-135 | B-box zinc finger protein 18-like isoform X3 | ||||
Swissprot | C0SVM5 | 6e-69 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | A0A4D6LRG1 | 1e-133 | A0A4D6LRG1_VIGUN; Zinc finger protein CONSTANS | ||||
STRING | XP_007157945.1 | 1e-128 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38960.1 | 3e-71 | DBB family protein |