PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Vun004933 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NF-YB | ||||||||||||
Protein Properties | Length: 205aa MW: 23097.8 Da PI: 5.8105 | ||||||||||||
Description | NF-YB family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 79.4 | 4.8e-25 | 60 | 143 | 3 | 86 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 ++d+ lP a +++i+k++lP + ++++da++++ ec +efi +v+se+++ c++e+r+ti+++ +l al+ lGf dy+e++ + Vun004933 60 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNKEERRTIAPEHVLKALGVLGFGDYIEEVYAA 143 6899***************************************************************************98654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.8E-39 | 57 | 189 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 6.54E-36 | 61 | 191 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.5E-22 | 63 | 128 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
XIHRIEKQHH HHTTPHLVFI NMGLSASASA MSTFFPSSXQ LTHRPLFIRM EPMDIVGKAK 60 EDASLPKATM TKIIKEMLPP DVRVARDAQD LLIECCVEFI NLVSSESNEV CNKEERRTIA 120 PEHVLKALGV LGFGDYIEEV YAAYEQHKLE TMQDSLKGAK WSNRAEMTEE EALAEQQRMF 180 AEARARMNGG AITPKQPDAD QSLES |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 1e-34 | 61 | 184 | 12 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027902427.1 | 1e-113 | protein Dr1 homolog isoform X1 | ||||
Swissprot | P49592 | 2e-90 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | A0A371F1G2 | 1e-111 | A0A371F1G2_MUCPR; Protein Dr1-like protein (Fragment) | ||||
TrEMBL | A0A4D6NK19 | 1e-111 | A0A4D6NK19_VIGUN; Nuclear transcription factor Y | ||||
STRING | XP_007138352.1 | 1e-110 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.2 | 1e-92 | nuclear factor Y, subunit B13 |
Publications ? help Back to Top | |||
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