PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TF ID | Vun004712 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||||||
Family | ERF | ||||||||||||
Protein Properties | Length: 214aa MW: 23987.8 Da PI: 6.7243 | ||||||||||||
Description | ERF family protein | ||||||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62 | 1.3e-19 | 120 | 171 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdp+ +r++lg+f+t+ +Aaka++ a+ k++g+ Vun004712 120 RYRGVRRRP-WGKFAAEIRDPTRK--GTRVWLGTFDTEIDAAKAYDSAAFKMRGH 171 8********.**********8542..4**********99**************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.79E-31 | 119 | 178 | No hit | No description |
SMART | SM00380 | 7.0E-36 | 120 | 184 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.5E-32 | 120 | 179 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.54 | 120 | 178 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-23 | 120 | 179 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.6E-14 | 120 | 171 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-13 | 121 | 132 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-13 | 160 | 180 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 214 aa Download sequence Send to blast |
GKMTTAEETS NLDLISQHLL GENISTSFFS NFSNLNPVKL EAPSSPSSPH FDFDFSDNTT 60 FFTFLEGYDL VADMEFLDHK TIINSTSTPP LNKCNSPQPL VSSSESEEKA KKVEHDEAKR 120 YRGVRRRPWG KFAAEIRDPT RKGTRVWLGT FDTEIDAAKA YDSAAFKMRG HKAILNFPLE 180 AGVSDPKPNT CGRKRSRDTL ELELPQVHLH HGVS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 8e-29 | 119 | 179 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 1e-28 | 117 | 179 | 2 | 64 | ATERF1 |
3gcc_A | 1e-28 | 117 | 179 | 2 | 64 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027934861.1 | 1e-156 | ethylene-responsive transcription factor ERF107-like | ||||
TrEMBL | A0A4D6MZB2 | 1e-155 | A0A4D6MZB2_VIGUN; EREBP-like factor | ||||
STRING | XP_007145470.1 | 1e-119 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G07580.1 | 5e-37 | ERF family protein |