PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Vun004620 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HD-ZIP | ||||||||||||
Protein Properties | Length: 217aa MW: 25239 Da PI: 6.5498 | ||||||||||||
Description | HD-ZIP family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.5 | 1.3e-19 | 34 | 86 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++f++eq++ Le Fe ++++ +++ +LA+ lgL+ rqV +WFqNrRa++k Vun004620 34 KRRFSDEQIRSLECIFETESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWK 86 568*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 123 | 1.4e-39 | 32 | 124 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 e+krr+s+eq+++LE Fe+e+kLep++K++lar+Lglqprqva+WFqnrRAR+k+k++E++y++Lk++yd+l+++ e+L+ke+e+L+ el++ Vun004620 32 ENKRRFSDEQIRSLECIFETESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKDEYDNLASRFESLKKEKESLQVELQK 124 58**************************************************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.06E-18 | 23 | 88 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.524 | 28 | 88 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.0E-16 | 31 | 92 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 5.6E-17 | 34 | 86 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.64E-13 | 34 | 89 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.5E-19 | 34 | 95 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 7.2E-6 | 59 | 68 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 63 | 86 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.2E-6 | 68 | 84 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 7.3E-12 | 88 | 128 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MEGDENIQAS KGKNVESFTS LEAPRRKNKK IENKRRFSDE QIRSLECIFE TESKLEPRKK 60 MQLARDLGLQ PRQVAIWFQN RRARWKSKRI EQEYRKLKDE YDNLASRFES LKKEKESLQV 120 ELQKLSDLVV SSHDGGREDK GGKEHSIEDG GSGSGYSSWK PEEKPRFSNE GLEERVGVYS 180 DDQNENSMMR SEKSEDKGHQ VLRMDDNDHA EMPLASL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027902455.1 | 1e-156 | homeobox-leucine zipper protein ATHB-12-like | ||||
Swissprot | P46897 | 2e-44 | ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7 | ||||
TrEMBL | A0A4D6NUQ8 | 1e-155 | A0A4D6NUQ8_VIGUN; Homeobox-leucine zipper protein | ||||
STRING | XP_007136490.1 | 1e-136 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 1e-42 | homeobox 7 |
Publications ? help Back to Top | |||
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