PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Vun004594 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | YABBY | ||||||||||||
Protein Properties | Length: 218aa MW: 24416.5 Da PI: 4.7526 | ||||||||||||
Description | YABBY family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 201.7 | 3e-62 | 6 | 163 | 2 | 166 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 ++f+ +eq+CyvqC+fC+til+vsvP +sl++vvtvrCGhCtsllsvn++kas +lla+ shl+ ++ + e++ ++ +++sas + Vun004594 6 HLFDLPEQICYVQCGFCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASfvpfHLLASLSHLEP--------KESSPEQHDGNKTLNSHSASLMTY 97 7899***********************************************99788888888888543........223333333333444454444444 PP YABBY 98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPki 166 s + +e++ +p v++PPekrqr Psayn+fikeei+r+ka+nPd++h+eafs+aaknWa fP+ Vun004594 98 S---DCEEEDLIPMSNIVNKPPEKRQRTPSAYNCFIKEEIKRLKAENPDMAHKEAFSTAAKNWANFPPT 163 4...44556667766779*************************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.2E-63 | 11 | 164 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.57E-9 | 110 | 163 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.2E-6 | 113 | 164 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MSSLNHLFDL PEQICYVQCG FCTTILMVSV PCSSLSMVVT VRCGHCTSLL SVNMMKASFV 60 PFHLLASLSH LEPKESSPEQ HDGNKTLNSH SASLMTYSDC EEEDLIPMSN IVNKPPEKRQ 120 RTPSAYNCFI KEEIKRLKAE NPDMAHKEAF STAAKNWANF PPTQCKGDDQ ESCSQTDQVV 180 DLDSQVDPPD AEVNEEDGEG FRGRKVQRNS MFERTAFE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027906806.1 | 1e-164 | axial regulator YABBY 4-like | ||||
Swissprot | Q9LDT3 | 4e-75 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | A0A4D6LPY1 | 1e-162 | A0A4D6LPY1_VIGUN; Uncharacterized protein | ||||
STRING | XP_007157432.1 | 1e-154 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 2e-77 | YABBY family protein |
Publications ? help Back to Top | |||
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