PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Vun004233 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Trihelix | ||||||||||||
Protein Properties | Length: 230aa MW: 26520.9 Da PI: 4.4864 | ||||||||||||
Description | Trihelix family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 105 | 5.4e-33 | 49 | 134 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r++++++++++ k+plWe++s++m++ g++rs+k+Ckekwen+nk++kk++e++k+r e+s+tcpyf++l+a Vun004233 49 RWPKAEVHALIRLRTSLDTKYQENGPKAPLWEDISIAMQRLGYSRSAKRCKEKWENINKYFKKVRENNKER-RENSKTCPYFHELDA 134 8*********************************************************************8.78889********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.992 | 42 | 106 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 1.5E-22 | 48 | 135 | No hit | No description |
CDD | cd12203 | 1.59E-25 | 49 | 113 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
QNQTTTLQSQ PPTLNNNFEI KKLNNGHHSA TSTSTITVTT SPASSSSSRW PKAEVHALIR 60 LRTSLDTKYQ ENGPKAPLWE DISIAMQRLG YSRSAKRCKE KWENINKYFK KVRENNKERR 120 ENSKTCPYFH ELDAIYKEKS LSQNPFGVFQ NMKPNEMMMM EPLMVQPEQQ WRPPPHSEEG 180 MEKNSSEEYQ EKEEENGGDD DDDDDDDDHV VVEEDEDGVE DEACETGTND |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027925285.1 | 1e-120 | trihelix transcription factor GT-2-like | ||||
Swissprot | Q39117 | 5e-45 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | A0A4D6M0G9 | 1e-123 | A0A4D6M0G9_VIGUN; Uncharacterized protein | ||||
STRING | XP_007152025.1 | 1e-107 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 1e-45 | Trihelix family protein |