PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Vun004083 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB | ||||||||||||
Protein Properties | Length: 235aa MW: 26956.9 Da PI: 6.5195 | ||||||||||||
Description | MYB family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.3 | 2.3e-15 | 8 | 53 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed +lv v ++G ++W+ Ia+ ++ Rt+k+c++rw +yl Vun004083 8 KGPWTEQEDFKLVSFVGLFGDRRWDFIAKXLN--RTGKSCRLRWVNYL 53 79*****************************7..************97 PP | |||||||
2 | Myb_DNA-binding | 54.9 | 2e-17 | 59 | 104 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++ Vun004083 59 RGKMTPQEERLVLELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTLM 104 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.212 | 3 | 53 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.25E-28 | 5 | 100 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-14 | 7 | 55 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.4E-15 | 8 | 53 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.9E-21 | 9 | 60 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.00E-10 | 10 | 53 | No hit | No description |
PROSITE profile | PS51294 | 26.957 | 54 | 108 | IPR017930 | Myb domain |
SMART | SM00717 | 6.2E-17 | 58 | 106 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.4E-16 | 59 | 103 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-23 | 61 | 107 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.74E-11 | 61 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MVQQEIRKGP WTEQEDFKLV SFVGLFGDRR WDFIAKXLNR TGKSCRLRWV NYLHPGLKRG 60 KMTPQEERLV LELHSKWGNR WSRIARKLPG RTDNEIKNYW RTLMRKKAQE KKRGEAASSS 120 TATPSSSSSV HSSISVSSKK HEVDPHASKK AGEESFYDTG GASTQDEGEG EFSMDDIWKD 180 IDMSEENNSF VHGESEQVVS PSASSWEYCC CDPLWVMMDE ESLFMSEPYF YALSG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 7e-31 | 5 | 108 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027926068.1 | 1e-152 | transcription factor MYB48-like | ||||
Swissprot | Q9LX82 | 1e-77 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A4D6NAX2 | 1e-150 | A0A4D6NAX2_VIGUN; Myb proto-oncogene protein | ||||
STRING | XP_007150291.1 | 1e-135 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.1 | 1e-77 | myb domain protein 48 |
Publications ? help Back to Top | |||
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