PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun003851
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 243aa    MW: 27806 Da    PI: 5.6632
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45827150PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-31656PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-17552148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed+ll  +++++G g+W++ ++  g+ R++k+c++rw +yl
        Vun003851  5 KGPWTQDEDQLLTSYIQKHGHGNWRALPKLAGLLRCGKSCRLRWINYL 52
                     79******************************99************97 PP
2Myb_DNA-binding53.26.9e-1758103148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ eE+e++++ +++lG++ W++Ia++++ gRt++++k+ w+++l
        Vun003851  58 RGNFSSEEEEIIIKMHELLGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 103
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.29E-31199IPR009057Homeodomain-like
PROSITE profilePS5129418.341152IPR017930Myb domain
SMARTSM007173.6E-14454IPR001005SANT/Myb domain
PfamPF002493.9E-16552IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-24659IPR009057Homeodomain-like
CDDcd001674.67E-10752No hitNo description
PROSITE profilePS5129425.78253107IPR017930Myb domain
SMARTSM007176.4E-1557105IPR001005SANT/Myb domain
PfamPF002496.1E-1558103IPR001005SANT/Myb domain
CDDcd001674.21E-1060103No hitNo description
Gene3DG3DSA:1.10.10.602.1E-2660107IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGLKKGPWTQ DEDQLLTSYI QKHGHGNWRA LPKLAGLLRC GKSCRLRWIN YLKPDIKRGN  60
FSSEEEEIII KMHELLGNRW SAIAAKLPGR TDNEIKNVWH THLKKKLLNS DTKRVVSNQK  120
IKRSDSNSST LTSSSSASAC TSSSDFSSFK NMNNNNMIKS EDTESEETTM PPIDESFWSE  180
ATVEDESSTM IMPSNSWTIS NELQFNSVET FQQHSFGSNF DDGMDFWYDI FIRSEDSIEL  240
PQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-28310725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in cold-regulation of CBF genes and in the development of freezing tolerance. May be part of a complex network of transcription factors controlling the expression of CBF genes and other genes in response to cold stress. Binds to the MYB recognition sequences in the promoters of CBF1, CBF2 and CBF3 genes (PubMed:17015446). Involved in drought and salt tolerance. May enhance expression levels of genes involved in abscisic acid (ABA) biosynthesis and signaling, as well as those encoding stress-protective proteins (PubMed:19161942). {ECO:0000269|PubMed:17015446, ECO:0000269|PubMed:19161942}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and drought stress (PubMed:19161942). Induced by salt stress (PubMed:19161942). {ECO:0000269|PubMed:19161942}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027934536.10.0transcription factor MYB13-like
SwissprotQ9LTC45e-72MYB15_ARATH; Transcription factor MYB15
TrEMBLA0A4D6MUC01e-179A0A4D6MUC0_VIGUN; Myb proto-oncogene protein
STRINGGLYMA02G00820.11e-136(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.12e-66myb domain protein 14
Publications ? help Back to Top
  1. Schnaubelt D, et al.
    Low glutathione regulates gene expression and the redox potentials of the nucleus and cytosol in Arabidopsis thaliana.
    Plant Cell Environ., 2015. 38(2): p. 266-79
    [PMID:24329757]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ma X, et al.
    CYCLIN-DEPENDENT KINASE G2 regulates salinity stress response and salt mediated flowering in Arabidopsis thaliana.
    Plant Mol. Biol., 2015. 88(3): p. 287-99
    [PMID:25948280]
  4. Kim SH, et al.
    Phosphorylation of the transcriptional repressor MYB15 by mitogen-activated protein kinase 6 is required for freezing tolerance in Arabidopsis.
    Nucleic Acids Res., 2017. 45(11): p. 6613-6627
    [PMID:28510716]
  5. Chezem WR,Memon A,Li FS,Weng JK,Clay NK
    SG2-Type R2R3-MYB Transcription Factor MYB15 Controls Defense-Induced Lignification and Basal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(8): p. 1907-1926
    [PMID:28733420]
  6. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]