PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Vun003825 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB | ||||||||||||
Protein Properties | Length: 244aa MW: 28070.3 Da PI: 8.9685 | ||||||||||||
Description | MYB family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.2 | 3.3e-17 | 20 | 67 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT +Ed+ l+++++ +G g+W+t a g++Rt+k+c++rw++yl Vun003825 20 RGPWTVDEDLTLINYIATHGEGRWNTLALSAGLKRTGKSCRLRWLNYL 67 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.1 | 3.1e-16 | 73 | 116 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ Vun003825 73 RGNITLEEQLLILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 116 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.007 | 15 | 67 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.24E-30 | 17 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.2E-14 | 19 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-16 | 20 | 67 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-21 | 21 | 74 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.28E-10 | 22 | 67 | No hit | No description |
PROSITE profile | PS51294 | 22.917 | 68 | 122 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-14 | 72 | 120 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-15 | 73 | 116 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-22 | 75 | 121 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.02E-6 | 93 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MDEKGRTTSL LSEDEMELRR GPWTVDEDLT LINYIATHGE GRWNTLALSA GLKRTGKSCR 60 LRWLNYLRPD VRRGNITLEE QLLILELHSR WGNRWSKIAQ YLPGRTDNEI KNYWRTRVQK 120 HAKQLKCDVN SKQFKDAMRY LWMPRLVERI QAAATATATT SVTTNDAYTS ENNLKNNHME 180 VHNNLKEKMG FIEPSPPMNN DFVASYVMQS HTPDNSSTAL SSSDSFGTQV STKSDLTDYY 240 SVPX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-26 | 17 | 114 | 24 | 120 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027917059.1 | 0.0 | transcription factor MYB108-like | ||||
Swissprot | Q2QZJ8 | 5e-90 | JAMYB_ORYSJ; Transcription factor JAMYB | ||||
TrEMBL | A0A4D6KUM1 | 1e-180 | A0A4D6KUM1_VIGUN; Myb proto-oncogene protein | ||||
STRING | XP_007158818.1 | 1e-141 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06490.1 | 1e-85 | myb domain protein 108 |
Publications ? help Back to Top | |||
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