PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Vun003810 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Trihelix | ||||||||||||
Protein Properties | Length: 244aa MW: 27266.2 Da PI: 5.5184 | ||||||||||||
Description | Trihelix family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 62.7 | 8.2e-20 | 152 | 232 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +ev++Li +r+e+ +r++ + +++lWee+s+k+ + g++rsp qCk+ w +l +y+ ik+ + ++ +++py +++e Vun003810 152 KWKTDEVKKLIGMREELRDRFQVVRGRMALWEEISQKLLADGISRSPGQCKSLWTSLVLKYEGIKNEKDSK-----KSWPYIEDME 232 7****************************************************************999984.....56*******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 8.258 | 145 | 209 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-5 | 146 | 209 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 2.0E-16 | 150 | 234 | No hit | No description |
CDD | cd12203 | 9.62E-17 | 151 | 216 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
XPEVIAIAIE NPASTITDEI NAKLSGKTHA GLGISTAKRA VDRHEKGNQP HLTANYSIDN 60 ASGAEGYLSE EDNTASGAEG DLSESEDSDE FWKPFVTPLP VKKPLGAYNA YDAQKEHESN 120 LKKDDSKIIY EAKSEEISTS EPKSSKSVKR NKWKTDEVKK LIGMREELRD RFQVVRGRMA 180 LWEEISQKLL ADGISRSPGQ CKSLWTSLVL KYEGIKNEKD SKKSWPYIED MERIMSDKEA 240 PATK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027904328.1 | 1e-161 | ribonuclease J-like isoform X2 | ||||
TrEMBL | A0A4D6NKJ5 | 1e-157 | A0A4D6NKJ5_VIGUN; Uncharacterized protein | ||||
STRING | XP_007137930.1 | 1e-143 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63420.1 | 3e-45 | Trihelix family protein |