PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun003323
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 262aa    MW: 29056.9 Da    PI: 10.234
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45954439PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-32688PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding612.5e-191156147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEde l ++v+ +G+++W+++++ ++ gR++k+c++rw + 
        Vun003323 11 KGPWSPEEDEALRRLVQTHGPRNWSLVSKSIP-GRSGKSCRLRWCNQ 56
                     79******************************.***********985 PP
2Myb_DNA-binding574.4e-1863107147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r ++T+eEde + +a++++G++ W+tIar ++ gRt++ +k++w++ 
        Vun003323  63 RRPFTAEEDEMIMKAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 107
                      679*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.297661IPR017930Myb domain
SuperFamilySSF466891.16E-328104IPR009057Homeodomain-like
SMARTSM007172.4E-171059IPR001005SANT/Myb domain
PfamPF002494.0E-191156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-271264IPR009057Homeodomain-like
CDDcd001673.41E-161355No hitNo description
SMARTSM007174.0E-1562110IPR001005SANT/Myb domain
PfamPF002493.7E-1563107IPR001005SANT/Myb domain
PROSITE profilePS5129421.79363112IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2465112IPR009057Homeodomain-like
CDDcd001671.06E-1165108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MASAKDMDRI KGPWSPEEDE ALRRLVQTHG PRNWSLVSKS IPGRSGKSCR LRWCNQLSPE  60
VERRPFTAEE DEMIMKAHAR FGNKWATIAR LLNGRTDNAI KNHWNSTLKR KMLRTSSNPR  120
PLKRVAAGSD SPSGSDLSDS GLPATPPIPL YEAVAGSVSV NLVPSILVAK SASFSATDIA  180
TSLSLSLPGS NNGPGRGPGP VAKEEPRSVD SEQFLSEELL KVMQDMIRVE VWNYMSGLER  240
RGVFTQTEWS NREMQQTLRE RS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-42101123105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027902521.10.0transcription factor MYB73-like
SwissprotO231604e-72MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A4D6NRH20.0A0A4D6NRH2_VIGUN; Myb proto-oncogene protein
STRINGXP_007136715.11e-126(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.14e-67myb domain protein 70
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]