PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun003266
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WOX
Protein Properties Length: 265aa    MW: 30164.2 Da    PI: 7.8702
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45814535PU_refUnigeneView CDS
PUT-167a-Vigna_unguiculata-24819PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox695.7e-22105165257
                T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                r+R+t+t+ ql++Le+ F + n +ps+e+++e++++l    +++e++V++WFqNrRa+ k+
  Vun003266 105 RQRWTPTPVQLQILERIFDQgNGTPSKEKIKEITAELgqhgQISETNVYNWFQNRRARSKR 165
                89*****************99**************************************97 PP
2Wus_type_Homeobox102.13.9e-33104166264
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        +r+RWtPtp Q++iLe+++++G  tP+ke+i++itaeL ++G+i+++NV++WFQNr+aR+++k
          Vun003266 104 SRQRWTPTPVQLQILERIFDQGNGTPSKEKIKEITAELGQHGQISETNVYNWFQNRRARSKRK 166
                        789***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-1899168IPR009057Homeodomain-like
PROSITE profilePS5007115.289101166IPR001356Homeobox domain
SuperFamilySSF466892.05E-19103167IPR009057Homeodomain-like
SMARTSM003898.8E-16103170IPR001356Homeobox domain
CDDcd000861.97E-13105166No hitNo description
PfamPF000468.3E-20105165IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
XKEDRRKRNG ERGGIAETAA EVAAADWEQQ QCQCRPNGEL MYVKVMTDEQ LETLRKQIAV  60
YATICDQLIE MHRTLSAQQD LAGARLGNLY CDPLMTSGGH KITSRQRWTP TPVQLQILER  120
IFDQGNGTPS KEKIKEITAE LGQHGQISET NVYNWFQNRR ARSKRKLQNV APTNTESEVD  180
TEVDSKDKKT KPDEFLSQHN ITTTSSGGAE KLCFQNPQXY SELQYLNNDS NKPYSMFPSD  240
ASLKSTRNLS VFNQVLSNSR MSMQW
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027934740.11e-166WUSCHEL-related homeobox 13-like
SwissprotO817881e-78WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBLA0A4D6N4M51e-164A0A4D6N4M5_VIGUN; Uncharacterized protein
STRINGXP_007142723.11e-143(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.16e-81WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]