PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun003183
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 269aa    MW: 31101.2 Da    PI: 5.934
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45812978PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-27293PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.11.5e-112166148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48
                     rg+WT++Ed++lv  v+++G +    +  +   ++Rt+k+c++rw +yl
        Vun003183 21 RGPWTEQEDLKLVYFVNMFGDR---XVGLYSKgLNRTGKSCRLRWVNYL 66
                     89******************99...89999999**************97 PP

2Myb_DNA-binding49.59.8e-1672117148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T +E+ l  +++ ++G++ W++Iar+++ gRt++++k++w++++
        Vun003183  72 RGKLTSQEEHLVMELHSKWGNR-WSRIARKLP-GRTDNEIKNFWRTFM 117
                      7999******************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.8111666IPR017930Myb domain
SuperFamilySSF466891.31E-2319113IPR009057Homeodomain-like
SMARTSM007171.2E-72068IPR001005SANT/Myb domain
PfamPF002491.3E-92166IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-152273IPR009057Homeodomain-like
PROSITE profilePS5129425.49167121IPR017930Myb domain
SMARTSM007173.5E-1271119IPR001005SANT/Myb domain
PfamPF002491.4E-1372115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-2274120IPR009057Homeodomain-like
CDDcd001675.81E-876117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
GSYQVKSYRR GEKMVQEEMR RGPWTEQEDL KLVYFVNMFG DRXVGLYSKG LNRTGKSCRL  60
RWVNYLHPDL KRGKLTSQEE HLVMELHSKW GNRWSRIARK LPGRTDNEIK NFWRTFMRKK  120
KALEKKRASP SSSSGSLSSL SSNNHAVDAD DSHASKEVGE ESFYDTGGYD DIMGLIGAGE  180
ECSLDDIWKD IVLSEDNNNN NNINILQQPV YELHSEEGSK IYSPSSWEYN CSHPLWVMDD  240
EEESNKMLFP ASSDQYYSWY EQGNAFLTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-27512042158MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-27512042158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027911891.11e-164transcription factor MYB48-like
SwissprotQ9LX824e-66MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A4D6LIC61e-164A0A4D6LIC6_VIGUN; Myb proto-oncogene protein
STRINGGLYMA11G15180.61e-106(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.14e-65myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]