PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Vun003183 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB | ||||||||||||
Protein Properties | Length: 269aa MW: 31101.2 Da PI: 5.934 | ||||||||||||
Description | MYB family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36.1 | 1.5e-11 | 21 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48 rg+WT++Ed++lv v+++G + + + ++Rt+k+c++rw +yl Vun003183 21 RGPWTEQEDLKLVYFVNMFGDR---XVGLYSKgLNRTGKSCRLRWVNYL 66 89******************99...89999999**************97 PP | |||||||
2 | Myb_DNA-binding | 49.5 | 9.8e-16 | 72 | 117 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T +E+ l +++ ++G++ W++Iar+++ gRt++++k++w++++ Vun003183 72 RGKLTSQEEHLVMELHSKWGNR-WSRIARKLP-GRTDNEIKNFWRTFM 117 7999******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.811 | 16 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.31E-23 | 19 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-7 | 20 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-9 | 21 | 66 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-15 | 22 | 73 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.491 | 67 | 121 | IPR017930 | Myb domain |
SMART | SM00717 | 3.5E-12 | 71 | 119 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-13 | 72 | 115 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.1E-22 | 74 | 120 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.81E-8 | 76 | 117 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
GSYQVKSYRR GEKMVQEEMR RGPWTEQEDL KLVYFVNMFG DRXVGLYSKG LNRTGKSCRL 60 RWVNYLHPDL KRGKLTSQEE HLVMELHSKW GNRWSRIARK LPGRTDNEIK NFWRTFMRKK 120 KALEKKRASP SSSSGSLSSL SSNNHAVDAD DSHASKEVGE ESFYDTGGYD DIMGLIGAGE 180 ECSLDDIWKD IVLSEDNNNN NNINILQQPV YELHSEEGSK IYSPSSWEYN CSHPLWVMDD 240 EEESNKMLFP ASSDQYYSWY EQGNAFLTG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 3e-27 | 5 | 120 | 42 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-27 | 5 | 120 | 42 | 158 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027911891.1 | 1e-164 | transcription factor MYB48-like | ||||
Swissprot | Q9LX82 | 4e-66 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A4D6LIC6 | 1e-164 | A0A4D6LIC6_VIGUN; Myb proto-oncogene protein | ||||
STRING | GLYMA11G15180.6 | 1e-106 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.1 | 4e-65 | myb domain protein 48 |
Publications ? help Back to Top | |||
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