PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun002576
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family DBB
Protein Properties Length: 296aa    MW: 32457.4 Da    PI: 6.2307
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45821080PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-17028PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.52e-06447542
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                C+ +e  e++l C  ++  lC +C ++ H        H++vpl
  Vun002576  4 QCNVCEAAEAKLLCCADEAALCLECDEKVHAAnklatkHQRVPL 47
               7******99*********************66899999999986 PP

2zf-B_box261.9e-085495338
   zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                +kC+ ++e    +fC +++ llC++C +++H        H+
  Vun002576 54 VPKCDICQEMVGYFFCLEDRALLCRNCDVSIHTAnacvsgHQ 95
               589*******9*********************5455666665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.722147IPR000315B-box-type zinc finger
CDDcd000217.03E-8347No hitNo description
SMARTSM003361.3E-9447IPR000315B-box-type zinc finger
PROSITE profilePS501198.935299IPR000315B-box-type zinc finger
SMARTSM003365.1E-155299IPR000315B-box-type zinc finger
PfamPF006431.7E-65495IPR000315B-box-type zinc finger
CDDcd000211.81E-95599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MKIQCNVCEA AEAKLLCCAD EAALCLECDE KVHAANKLAT KHQRVPLSLS ASHVPKCDIC  60
QEMVGYFFCL EDRALLCRNC DVSIHTANAC VSGHQRFLLT GVRVGLEATE RGASSSSVKS  120
QSGEKTSDAK SSSISRNVTS MPQPSNFNEM LPSQMGGVED FAPNKVSYGG GYTAGNISQW  180
PMEEFLGLNE FSQYYNYMDG SSKADSGKLG DSDSSVLRSS EEEIDDDGFL GRVPDSSWTV  240
PQIPSPPTAS GLHCPELRRY TSDNAMFVPD ICFSGERRQP RRVLHHSIHS KRRRNL
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027909353.10.0B-box zinc finger protein 22-like
SwissprotQ9SYM26e-85BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A4D6LBU00.0A0A4D6LBU0_VIGUN; Zinc finger protein CONSTANS
STRINGXP_007133306.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.12e-65light-regulated zinc finger protein 1