PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun002440

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

MYB

Protein Properties

Length: 303aa MW: 34357.6 Da PI: 7.0342

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45803200	PU_unref	Unigene	View CDS
PUT-167a-Vigna_unguiculata-32782	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61	2.5e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++lvd+++++G g+W++ ++ g++R++k+c++rw +yl Vun002440 14 KGPWSPEEDKILVDYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	50.1	6.1e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++l++++++ lG++ W++Ia++++ gRt++++k+ w+++l Vun002440 67 RGKFSDQEEQLIINLHAVLGNK-WAAIASHLP-GRTDNEIKNLWNTHL 112 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.629	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.98E-31	11	108	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-15	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	8.8E-18	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.6E-25	15	68	IPR009057	Homeodomain-like
CDD	cd00167	6.19E-12	16	61	No hit	No description
PROSITE profile	PS51294	25.672	62	116	IPR017930	Myb domain
SMART	SM00717	2.1E-14	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	5.6E-15	67	112	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.5E-26	69	116	IPR009057	Homeodomain-like
CDD	cd00167	1.25E-10	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MMRTPSSDES GLKKGPWSPE EDKILVDYIQ KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SDQEEQLIIN LHAVLGNKWA AIASHLPGRT DNEIKNLWNT HLRKKLLQMG 120 LDPVTHRPRT DHLNLLTNLQ QILAAAKIVS TLTNPSDINN VLRLHSDAKF QLLQNMFQLT 180 PSSNSFLPLN SLTDGFMNHC NNDLPNLLHD GNSVSEIHPN FQNFEALHHP TQENSLPNLV 240 SASPERSPLK EAENVNANSK ECSNPSSTTF ELAWGDFMDE DATENYWKGF IDQHCNQTWS 300 TVQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	6e-28	12	116	25	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250\|UniProtKB:Q9M2D9}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by gravity in roots. {ECO:0000269\|PubMed:24902892}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027913214.1	0.0	transcription factor MYB92-like
Swissprot	Q9SBF3	9e-81	MYB92_ARATH; Transcription factor MYB92
TrEMBL	A0A4D6LTD9	0.0	A0A4D6LTD9_VIGUN; Myb proto-oncogene protein
STRING	XP_007157076.1	1e-179	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	1e-97	myb domain protein 9

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]